fetchVegdata: add siteobsiid to vegplot tables; activate vegbasalarea table #1401
Workflow file for this run
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| on: | |
| push: | |
| branches: | |
| - main | |
| - master | |
| pull_request: | |
| branches: | |
| - main | |
| - master | |
| schedule: | |
| - cron: '0 0 * * 6' # At 00:00 on Saturday | |
| workflow_dispatch: | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: windows-latest, r: 'release'} | |
| - {os: macOS-latest, r: 'release'} | |
| - {os: ubuntu-22.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/jammy/latest"} | |
| - {os: ubuntu-22.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/jammy/latest"} | |
| - {os: ubuntu-20.04, r: '3.6', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} | |
| env: | |
| RSPM: ${{ matrix.config.rspm }} | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Get branch name (push) | |
| if: github.event_name != 'pull_request' | |
| shell: bash | |
| run: echo "BRANCH_NAME=$(echo ${GITHUB_REF#refs/heads/} | tr / -)" >> $GITHUB_ENV | |
| - name: Get branch name (pull request) | |
| if: github.event_name == 'pull_request' | |
| shell: bash | |
| run: echo "BRANCH_NAME=$(echo ${GITHUB_HEAD_REF} | tr / -)" >> $GITHUB_ENV | |
| - name: Configure git | |
| if: runner.os == 'Windows' && (github.event_name == 'schedule' || github.event_name == 'workflow_dispatch') | |
| run: | | |
| git config user.email "[email protected]" | |
| git config user.name "github-actions" | |
| git pull --no-rebase origin ${{ env.BRANCH_NAME }} | |
| echo ${{ env.BRANCH_NAME }} | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::rcmdcheck, any::remotes, terra=?ignore-before-r=4.1.0, knitr=?ignore-before-r=4.0.0, rmarkdown=?ignore-before-r=4.0.0, testthat=?ignore-before-r=4.0.0, local::., brownag/soilDBdata | |
| # upgrade: 'TRUE' ## NB: required to force building of source packages | |
| cache: false | |
| needs: check | |
| - name: Install aqp off GitHub (devel and 3.6 only) | |
| if: matrix.config.r == 'devel' || matrix.config.r == '3.6' | |
| run: | | |
| remotes::install_github("ncss-tech/aqp", dependencies = TRUE, build = FALSE) | |
| shell: Rscript {0} | |
| - name: Install terra off r-universe (devel only) | |
| if: matrix.config.r == 'devel' #|| runner.os == 'Windows' | |
| run: install.packages('terra', repos = 'https://rspatial.r-universe.dev') | |
| shell: Rscript {0} | |
| - uses: r-lib/actions/check-r-package@v2 | |
| with: | |
| upload-snapshots: true | |
| - name: Render README | |
| if: runner.os == 'Windows' && (github.event_name == 'schedule' || github.event_name == 'workflow_dispatch') | |
| run: | | |
| install.packages(c("rmarkdown","devtools","pkgdown","aqp")) | |
| remotes::install_github(c("ncss-tech/aqp"), dependencies = FALSE) | |
| rmarkdown::render("README.Rmd") | |
| shell: Rscript {0} | |
| - name: Commit and push results | |
| if: runner.os == 'Windows' && (github.event_name == 'schedule' || github.event_name == 'workflow_dispatch') | |
| run: | | |
| git add README.md | |
| git commit -m 'Render README.Rmd' || echo "No changes to commit" | |
| git add inst/\* | |
| git commit -m 'Update inst' || echo "No changes to commit" | |
| git push origin HEAD:${{ env.BRANCH_NAME }} |