rsatoolbox version requirement

neuromatch · Aug 21, 2024 · 4a50bd9 · 4a50bd9
1 parent 87204d2
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Showing 5 changed files with 45 additions and 79 deletions.
diff --git a/requirements.txt b/requirements.txt
@@ -23,7 +23,7 @@ tensorflow==2.8
 ffmpeg
 imageio-ffmpeg
 torchlens
-rsatoolbox
+rsatoolbox==0.1.5
 vibecheck
 seaborn
 plotly

diff --git a/tutorials/W1D3_ComparingArtificialAndBiologicalNetworks/W1D3_Tutorial1.ipynb b/tutorials/W1D3_ComparingArtificialAndBiologicalNetworks/W1D3_Tutorial1.ipynb
@@ -62,8 +62,7 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "cellView": "form",
-    "execution": {}
+    "cellView": "form"
    },
    "outputs": [],
    "source": [
@@ -106,15 +105,15 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "cellView": "form",
-    "execution": {}
+    "cellView": "form"
    },
    "outputs": [],
    "source": [
     "# @title Install dependencies\n",
     "\n",
-    "!pip install -q ipympl ipywidgets mpl_interactions[\"jupyter\"] rsatoolbox torchlens\n",
+    "!pip install -q ipympl ipywidgets mpl_interactions[\"jupyter\"] torchlens\n",
     "!pip install -q graphviz\n",
+    "!pip install rsatoolbox==0.1.5\n",
     "\n",
     "# To install jupyter-matplotlib (ipympl) via pip\n",
     "!pip install -q torchlens\n",
@@ -135,8 +134,7 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "cellView": "form",
-    "execution": {}
+    "cellView": "form"
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    "outputs": [],
    "source": [
@@ -163,8 +161,7 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "cellView": "form",
-    "execution": {}
+    "cellView": "form"
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@@ -213,8 +210,7 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "cellView": "form",
-    "execution": {}
+    "cellView": "form"
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@@ -231,8 +227,7 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "cellView": "form",
-    "execution": {}
+    "cellView": "form"
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    "outputs": [],
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@@ -316,8 +311,7 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "cellView": "form",
-    "execution": {}
+    "cellView": "form"
    },
    "outputs": [],
    "source": [
@@ -680,8 +674,7 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "cellView": "form",
-    "execution": {}
+    "cellView": "form"
    },
    "outputs": [],
    "source": [
@@ -722,8 +715,7 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "cellView": "form",
-    "execution": {}
+    "cellView": "form"
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@@ -752,8 +744,7 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "cellView": "form",
-    "execution": {}
+    "cellView": "form"
    },
    "outputs": [],
    "source": [
@@ -787,8 +778,7 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "cellView": "form",
-    "execution": {}
+    "cellView": "form"
    },
    "outputs": [],
    "source": [
@@ -841,8 +831,7 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "cellView": "form",
-    "execution": {}
+    "cellView": "form"
    },
    "outputs": [],
    "source": [
@@ -898,8 +887,7 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "cellView": "form",
-    "execution": {}
+    "cellView": "form"
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    "source": [
@@ -951,8 +939,7 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "cellView": "form",
-    "execution": {}
+    "cellView": "form"
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    "source": [
@@ -978,8 +965,7 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "cellView": "form",
-    "execution": {}
+    "cellView": "form"
    },
    "outputs": [],
    "source": [
@@ -1015,8 +1001,7 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "cellView": "form",
-    "execution": {}
+    "cellView": "form"
    },
    "outputs": [],
    "source": [
@@ -1047,8 +1032,7 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "cellView": "form",
-    "execution": {}
+    "cellView": "form"
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    "source": [
@@ -1083,8 +1067,7 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "cellView": "form",
-    "execution": {}
+    "cellView": "form"
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    "outputs": [],
    "source": [
@@ -1100,8 +1083,7 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "cellView": "form",
-    "execution": {}
+    "cellView": "form"
    },
    "outputs": [],
    "source": [
@@ -1115,8 +1097,7 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "cellView": "form",
-    "execution": {}
+    "cellView": "form"
    },
    "outputs": [],
    "source": [
@@ -1151,8 +1132,7 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "cellView": "form",
-    "execution": {}
+    "cellView": "form"
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    "outputs": [],
    "source": [
@@ -1189,8 +1169,7 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "cellView": "form",
-    "execution": {}
+    "cellView": "form"
    },
    "outputs": [],
    "source": [
@@ -1208,8 +1187,7 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "cellView": "form",
-    "execution": {}
+    "cellView": "form"
    },
    "outputs": [],
    "source": [
@@ -1263,8 +1241,7 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "cellView": "form",
-    "execution": {}
+    "cellView": "form"
    },
    "outputs": [],
    "source": [
@@ -1298,8 +1275,7 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "cellView": "form",
-    "execution": {}
+    "cellView": "form"
    },
    "outputs": [],
    "source": [
@@ -1312,8 +1288,7 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "cellView": "form",
-    "execution": {}
+    "cellView": "form"
    },
    "outputs": [],
    "source": [
@@ -1336,9 +1311,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {
-    "execution": {}
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "#to_remove explanation\n",
@@ -1372,8 +1345,7 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "cellView": "form",
-    "execution": {}
+    "cellView": "form"
    },
    "outputs": [],
    "source": [
@@ -1386,8 +1358,7 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "cellView": "form",
-    "execution": {}
+    "cellView": "form"
    },
    "outputs": [],
    "source": [
@@ -1410,9 +1381,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {
-    "execution": {}
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "#to_remove explanation\n",
@@ -1439,9 +1408,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {
-    "execution": {}
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "#to_remove explanation\n",
@@ -1457,8 +1424,7 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "cellView": "form",
-    "execution": {}
+    "cellView": "form"
    },
    "outputs": [],
    "source": [
@@ -1508,9 +1474,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {
-    "execution": {}
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "# Enable the custom widget manager in Colab.\n",
@@ -1525,8 +1489,7 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "cellView": "form",
-    "execution": {}
+    "cellView": "form"
    },
    "outputs": [],
    "source": [
@@ -1650,8 +1613,7 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "cellView": "form",
-    "execution": {}
+    "cellView": "form"
    },
    "outputs": [],
    "source": [

diff --git a/tutorials/W1D3_ComparingArtificialAndBiologicalNetworks/W1D3_Tutorial2.ipynb b/tutorials/W1D3_ComparingArtificialAndBiologicalNetworks/W1D3_Tutorial2.ipynb
@@ -88,7 +88,8 @@
    "source": [
     "# @title Install and import feedback gadget\n",
     "\n",
-    "!pip install torch torchvision matplotlib numpy scikit-learn rsatoolbox scipy vibecheck --quiet\n",
+    "!pip install torch torchvision matplotlib numpy scikit-learn scipy vibecheck --quiet\n",
+    "!pip install rsatoolbox==0.1.5 --quiet\n",
     "\n",
     "from vibecheck import DatatopsContentReviewContainer\n",
     "def content_review(notebook_section: str):\n",

diff --git a/tutorials/W1D3_ComparingArtificialAndBiologicalNetworks/W1D3_Tutorial3.ipynb b/tutorials/W1D3_ComparingArtificialAndBiologicalNetworks/W1D3_Tutorial3.ipynb
@@ -100,7 +100,9 @@
    "source": [
     "# @title Install and import feedback gadget\n",
     "\n",
-    "!pip install numpy pandas torch torchvision matplotlib ipython Pillow rsatoolbox plotly networkx requests vibecheck --quiet\n",
+    "!pip install numpy pandas torch torchvision matplotlib ipython Pillow plotly networkx requests vibecheck --quiet\n",
+    "!pip install rsatoolbox==0.1.5 --quiet\n",
+    "\n",
     "\n",
     "from vibecheck import DatatopsContentReviewContainer\n",
     "def content_review(notebook_section: str):\n",