Merge pull request #59 from neuromatch/release-v0.1.1

Fix bugs from the first draft

.github/actions/check-notebooks/action.yaml

@@ -43,13 +43,26 @@ runs:
     #   with:
     #     output: " "
 
+    - name: Get changed files
+      if: "!contains(env.COMMIT_MESSAGE, 'skip ci')"
+      id: changed-files
+      uses: tj-actions/changed-files@v35
+
+    - name: List all changed files
+      run: |
+        for file in ${{ steps.changed-files.outputs.all_changed_files }}; do
+          echo "$file was changed."
+        done
+      shell: bash -l {0}
+
     - name: Get notebooks
       run: |
         if ${{ inputs.run_all == 'true' }}; then
           # nbs="tutorials/*/*Tutorial*.ipynb";
           nbs="tutorials/W2D5_*/*Tutorial*.ipynb";
         else
-          nbs=`python ci/select_notebooks.py ${{ steps.changes.outputs.files }}`;
+          nbs=`python ci/select_notebooks.py ${{ steps.changed-files.outputs.all_changed_files }}`;
+          # nbs=`python ci/select_notebooks.py ${{ steps.changes.outputs.files }}`;
         fi
         echo "NBS=$nbs" >> $GITHUB_ENV
       shell: bash -l {0}

.github/actions/setup/action.yaml

@@ -10,6 +10,12 @@ inputs:
 runs:
   using: composite
   steps:
+    - name: Checkout
+      uses: actions/checkout@v3
+      with:
+        persist-credentials: false
+        fetch-depth: 0
+        ref: ${{ github.head_ref }}
     # - name: Set up Python (conda)
     #   uses: conda-incubator/setup-miniconda@v3
     #   with:

.github/workflows/notebook-pr.yaml

@@ -55,7 +55,7 @@ jobs:
       - name: Run Notebooks
         uses: ./.github/actions/check-notebooks
         with:
-          run_all: 'true'
+          run_all: 'false'
           # exec_flag: '--check-only'
           exec_flag: '--execute'
           # exercise-continue-on-error: true