Add SAM where read names > 254 characters - thanks @audy #7
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| name: Upload data to bucket | |
| on: | |
| push: | |
| branches: [ "main" ] | |
| paths: | |
| - data/** | |
| workflow_dispatch: | |
| jobs: | |
| Upload: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@master | |
| # Doesn't seem to support sync on .gz/.bcf/.bam files (always deletes and reuploads them) | |
| - name: Upload | |
| run: aws s3 sync ./data/ s3://bio-data-zoo/ | |
| env: | |
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| AWS_ENDPOINT_URL: ${{ secrets.AWS_ENDPOINT_URL }} | |
| AWS_EC2_METADATA_DISABLED: true |