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    18 repositories

    • datapipe

      Public
      Nextflow implementation of grapevine
      Nextflow
      •
      GNU General Public License v3.0
      •3•8•6•0•Updated Sep 2, 2024Sep 2, 2024

    • docs

      Public
      HTML
      •6•2•0•0•Updated Dec 4, 2023Dec 4, 2023

    • phylo-reports

      Public
      Jupyter Notebook
      •1•1•0•2•Updated Jul 6, 2023Jul 6, 2023

    • dipi-group

      Public
      Data integrity and pipeline integration working group
      1•4•1•0•Updated May 3, 2022May 3, 2022

    • Delta-analysis

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •1•1•0•0•Updated Dec 19, 2021Dec 19, 2021

    • travel-quarantine

      Public
      Python
      •0•0•0•0•Updated Dec 2, 2021Dec 2, 2021

    • civet

      Public archive
      Python
      •
      GNU General Public License v3.0
      •14•7•0•0•Updated Nov 30, 2021Nov 30, 2021

    • camb-uni-phylo

      Public
      1•0•0•0•Updated Nov 10, 2021Nov 10, 2021

    • grapevine

      Public
      Process consensus file for COG-UK data
      Python
      •
      GNU General Public License v3.0
      •2•14•11•0•Updated Sep 7, 2021Sep 7, 2021

    • geography_cleaning

      Public
      Python
      •1•2•1•1•Updated Sep 3, 2021Sep 3, 2021

    • UK-recombination-analysis

      Public
      Python
      •0•0•0•0•Updated Jul 19, 2021Jul 19, 2021

    • B.1.1.7_spatial_analysis_UK

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •2•1•1•0•Updated Jul 19, 2021Jul 19, 2021

    • mink

      Public
      Python
      •
      GNU General Public License v3.0
      •0•2•2•0•Updated Jan 5, 2021Jan 5, 2021

    • UK-lineage-dynamics-analysis

      Public
      Large-scale virus genome sequencing reveals the genetic structure and importation dynamics of a national COVID-19 epidemic.
      R
      •
      Creative Commons Attribution 4.0 International
      •1•4•5•0•Updated Dec 23, 2020Dec 23, 2020

    • D614G_spike_mutation_analysis

      Public
      0•1•0•0•Updated Oct 16, 2020Oct 16, 2020

    • cog-data

      Public
      0•0•0•0•Updated Oct 1, 2020Oct 1, 2020

    • data-working-group

      Public
      Outputs from COG-UK data working group
      MIT License
      •0•0•0•0•Updated Jun 15, 2020Jun 15, 2020

    • cog-uk.github.io

      Public
      0•0•0•0•Updated Mar 18, 2020Mar 18, 2020