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@COG-UK

COG-UK

COG-UK Consortium has been created to deliver large-scale & rapid whole-genome virus sequencing to NHS centres and the UK government

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  1. grapevine grapevine Public

    Process consensus file for COG-UK data

    Python 14 2

  2. datapipe datapipe Public

    Nextflow implementation of grapevine

    Nextflow 8 3

  3. civet civet Public archive

    Forked from artic-network/civet

    Python 7 2

  4. dipi-group dipi-group Public

    Data integrity and pipeline integration working group

    4 1

  5. UK-lineage-dynamics-analysis UK-lineage-dynamics-analysis Public

    Large-scale virus genome sequencing reveals the genetic structure and importation dynamics of a national COVID-19 epidemic.

    R 4 1

  6. docs docs Public

    HTML 2 6

Repositories

Showing 10 of 18 repositories
  • datapipe Public

    Nextflow implementation of grapevine

    COG-UK/datapipe’s past year of commit activity
    Nextflow 8 GPL-3.0 3 6 0 Updated Sep 2, 2024
  • docs Public
    COG-UK/docs’s past year of commit activity
    HTML 2 6 0 0 Updated Dec 4, 2023
  • phylo-reports Public
    COG-UK/phylo-reports’s past year of commit activity
    Jupyter Notebook 1 1 0 2 Updated Jul 6, 2023
  • dipi-group Public

    Data integrity and pipeline integration working group

    COG-UK/dipi-group’s past year of commit activity
    4 1 1 0 Updated May 3, 2022
  • Delta-analysis Public
    COG-UK/Delta-analysis’s past year of commit activity
    Jupyter Notebook 1 CC-BY-4.0 1 0 0 Updated Dec 19, 2021
  • travel-quarantine Public
    COG-UK/travel-quarantine’s past year of commit activity
    Python 0 0 0 0 Updated Dec 2, 2021
  • civet Public archive Forked from artic-network/civet
    COG-UK/civet’s past year of commit activity
    Python 7 GPL-3.0 14 0 0 Updated Nov 30, 2021
  • camb-uni-phylo Public
    COG-UK/camb-uni-phylo’s past year of commit activity
    0 1 0 0 Updated Nov 10, 2021
  • grapevine Public

    Process consensus file for COG-UK data

    COG-UK/grapevine’s past year of commit activity
    Python 14 GPL-3.0 2 11 0 Updated Sep 7, 2021
  • geography_cleaning Public
    COG-UK/geography_cleaning’s past year of commit activity
    Python 2 1 1 1 Updated Sep 3, 2021
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