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@SATBBI Bioinformatics FMHS Stellenbosch University

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    7 repositories

    • configs

      Public
      Config files used to define parameters specific to compute environments at different Institutions
      Nextflow
      •
      MIT License
      •276•0•0•1•Updated Oct 19, 2023Oct 19, 2023

    • rnaseq

      Public
      RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
      Nextflow
      •
      MIT License
      •708•1•0•0•Updated Sep 5, 2023Sep 5, 2023

    • seek_satbbi

      Public template
      For finding, sharing and exchanging Data, Models, Simulations and Processes in Science.
      Ruby
      •
      BSD 3-Clause "New" or "Revised" License
      •52•0•0•0•Updated Aug 23, 2023Aug 23, 2023

    • Curricula

      Public
      Repository of resources to prepare for bioinformatics, e.g., getting acquainted with bash
      0•1•0•0•Updated Jul 8, 2023Jul 8, 2023

    • LuminexPipeline

      Public
      R
      •
      Other
      •0•0•0•0•Updated Dec 26, 2022Dec 26, 2022

    • LuminexPipeline_container

      Public
      MIT License
      •0•0•0•0•Updated Nov 20, 2022Nov 20, 2022

    • LuminexPipeline_Nextflow_script

      Public
      Nextflow
      •0•0•0•0•Updated Sep 12, 2022Sep 12, 2022