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@danforthcenter Donald Danforth Plant Science Center

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    108 repositories

    • plantcv

      Public
      Plant phenotyping with image analysis
      sciencebioinformaticsimage-analysisplant-phenotypingplantcv
      Python
      •
      Mozilla Public License 2.0
      •265•673•85•15•Updated Jan 3, 2025Jan 3, 2025

    • plantcv-geospatial

      Public
      Geospatial add-on package to PlantCV
      Python
      •
      Mozilla Public License 2.0
      •1•1•8•4•Updated Jan 2, 2025Jan 2, 2025

    • plantcv-extras

      Public
      An add-on package for PlantCV with extra tools
      Python
      •
      Mozilla Public License 2.0
      •0•0•2•1•Updated Dec 20, 2024Dec 20, 2024

    • pcvr

      Public
      R functions for use with plantCV output
      R
      •0•4•0•0•Updated Dec 18, 2024Dec 18, 2024

    • plantcv-tasselyzer-tutorial

      Public
      Jupyter Notebook
      •
      MIT License
      •3•1•0•1•Updated Dec 18, 2024Dec 18, 2024

    • syncomBuildR

      Public
      R
      •0•1•0•0•Updated Dec 17, 2024Dec 17, 2024

    • plantcv-tutorial-grayscale

      Public
      Tutorial for analyzing grayscale image data using PlantCV.
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Dec 16, 2024Dec 16, 2024

    • aws-tools

      Public
      Danforth Center tools for working with AWS
      Python
      •
      Mozilla Public License 2.0
      •0•1•2•0•Updated Dec 13, 2024Dec 13, 2024

    • plantcv-annotate

      Public
      add-on package for PlantCV annotation tools
      Python
      •
      Mozilla Public License 2.0
      •0•1•6•5•Updated Dec 12, 2024Dec 12, 2024

    • ansible-raspberry-pi

      Public
      Python
      •
      Mozilla Public License 2.0
      •0•0•0•0•Updated Dec 11, 2024Dec 11, 2024

    • photo-maize-paper

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Dec 9, 2024Dec 9, 2024

    • KIG_v2

      Public
      Updated version of the KIG list using OrthoFinder
      R
      •0•0•0•0•Updated Dec 5, 2024Dec 5, 2024

    • plantcv-tutorial-watershed

      Public
      watershed tutorial
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•1•0•0•Updated Nov 17, 2024Nov 17, 2024

    • plantcv-tutorial-seeds

      Public
      seed workflow tutorial
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•2•0•0•Updated Nov 17, 2024Nov 17, 2024

    • plantcv-tutorial-arabidopsis-tray

      Public
      Tutorial for analyzing top-down trays of plants with PlantCV
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Nov 17, 2024Nov 17, 2024

    • plantcv-tutorial-v4-multiobject

      Public
      Tutorial for analyzing multiple plants, leaves, or objects using PlantCV v4.
      Jupyter Notebook
      •
      MIT License
      •0•0•0•2•Updated Nov 15, 2024Nov 15, 2024

    • plantcv-tutorial-morphology

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•2•0•0•Updated Nov 14, 2024Nov 14, 2024

    • plantcv-tutorial-germination

      Public
      Notebook for performing germination studies using plantCV
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •1•2•0•0•Updated Nov 14, 2024Nov 14, 2024

    • plantcv-tutorial-pollen-germination

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•1•0•0•Updated Nov 14, 2024Nov 14, 2024

    • plantcv-stomata-tutorial-pcv4

      Public
      Tutorial for analyzing microscopy images of stomata using PlantCV version 4.0
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •1•0•0•0•Updated Nov 13, 2024Nov 13, 2024

    • plantcv-tutorial-thermal

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Nov 13, 2024Nov 13, 2024

    • plantcv-tutorial-color-correction

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Nov 13, 2024Nov 13, 2024

    • plantcv-tutorial-input-output

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Nov 13, 2024Nov 13, 2024

    • plantcv-homology-tutorials

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Nov 12, 2024Nov 12, 2024

    • plantcv-tutorial-hyperspectral-smf-detection

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•1•0•0•Updated Nov 12, 2024Nov 12, 2024

    • plantcv-tutorial-machine-learning

      Public
      Tutorial for analyzing image data using machine learning tools from PlantCV.
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Nov 12, 2024Nov 12, 2024

    • plantcv-tutorial-kmeans-clustering

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Nov 12, 2024Nov 12, 2024

    • napari_naive_bayes_tutorial

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Nov 12, 2024Nov 12, 2024

    • plantcv-tutorial-photosynthesis-multi

      Public
      Tutorial for using PlantCV for analysis of photosynthesis images that contain multiple objects (such as multiple plants or leaves).
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Nov 12, 2024Nov 12, 2024

    • plantcv-tutorial-simple-rgb-workflow

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •1•0•0•0•Updated Nov 12, 2024Nov 12, 2024