Fred Hutch Data Science Lab

All

126 repositories

AnVIL_Collection
Public
📚 An auto-generating collection of all materials related to the AnVIL and GDSCN projects
website anvil content-library gdscn edtech-software
R
•
Creative Commons Attribution 4.0 International
•1•0•4•0•Updated Nov 24, 2024Nov 24, 2024
AnVIL_Outreach_Dashboard
Public
CSS
•
Creative Commons Attribution 4.0 International
•0•0•4•0•Updated Nov 24, 2024Nov 24, 2024
datathon_2024
Public
Datathon Information
HTML
•
MIT License
•0•0•0•0•Updated Nov 22, 2024Nov 22, 2024
AnVIL_Poll_2024
Public
A summary of our findings from the 2024 State of the AnVIL user poll.
HTML
•
MIT License
•0•0•4•1•Updated Nov 21, 2024Nov 21, 2024
Tools_for_Reproducible_Workflows_in_R
Public
CSS
•
Creative Commons Attribution 4.0 International
•0•0•10•1•Updated Nov 20, 2024Nov 20, 2024
Proactive_Data_Management_and_Sharing
Public
Data management and sharing best practices for biomedical data handling folks
CSS
•
Creative Commons Attribution 4.0 International
•0•0•11•1•Updated Nov 20, 2024Nov 20, 2024
metricminer
Public
R package that digs up data that matters from APIs, making it dashboard-ready
edtech-software
R
•
MIT License
•0•2•34•3•Updated Nov 18, 2024Nov 18, 2024
FH_Cluster_101
Public
This course introduces users to the Fred Hutch Cluster. It will lead users through account creation, using the terminal, connecting to the cluster, submitting jobs, and transferring files. Available in both web and Leanpub formats.
course command-line hpcc computing-cluster hutch-course
JavaScript
•
Creative Commons Attribution 4.0 International
•2•0•9•0•Updated Nov 18, 2024Nov 18, 2024
DaSEH
Public
🌼 Collection of materials to accompany the R25 funded "Data Science for Environmental Health" short course
data-science course tidyverse public-health beginner beginner-friendly r-programming niehs environmental-health beginner-programming
HTML
•
MIT License
•1•0•43•1•Updated Nov 14, 2024Nov 14, 2024
Intro_to_Python
Public
The course covers fundamentals of Python, a high-level programming language, and use it to wrangle data for analysis and visualization.
hutch-course
JavaScript
•
Creative Commons Attribution 4.0 International
•0•0•0•0•Updated Nov 14, 2024Nov 14, 2024
intro_r_slides
Public
Slides for the Intro R course
HTML
•0•0•0•0•Updated Nov 13, 2024Nov 13, 2024
Intro_to_Notebooks
Public
JavaScript
•0•0•0•0•Updated Nov 13, 2024Nov 13, 2024
Datathon-CO2-emissions
Public
0•0•0•0•Updated Nov 13, 2024Nov 13, 2024
Ethical_Data_Handling_for_Cancer_Research
Public
This course is designed to help researchers and investigators understand the key principles of data management from an ethics, privacy, security, usability and discoverability perspective.
security data privacy research ethics itn-course audience-leaders audience-researchers category-bp
TeX
•
Creative Commons Attribution 4.0 International
•0•1•13•0•Updated Nov 8, 2024Nov 8, 2024
DataViz_Practice
Public
ITN course "Cancer Informatics Data Visualization in Practice" focusing on practicing best practices in data visualization
CSS
•
Creative Commons Attribution 4.0 International
•0•0•4•2•Updated Nov 6, 2024Nov 6, 2024
DataViz_Considerations
Public
ITN course "Considerations for Bioinformatic Data Visualization" focusing on considerations for best practices in data visualization
CSS
•
Creative Commons Attribution 4.0 International
•0•0•4•2•Updated Nov 6, 2024Nov 6, 2024
project_and_loading
Public
Project showing how to work with projects and loading excel files for learning community session.
0•0•0•0•Updated Nov 6, 2024Nov 6, 2024
test_bench_to_bytes
Public
Dummy repo created to help figure out https://github.com/fhdsl/bench_to_bytes/issues/7
CSS
•
Creative Commons Attribution 4.0 International
•0•0•4•0•Updated Nov 1, 2024Nov 1, 2024
fhdsl_Training_Kit
Public
This resource is intended to provide guidance and assistance for creating online and in-person training materials.
CSS
•
Creative Commons Attribution 4.0 International
•0•0•4•0•Updated Nov 1, 2024Nov 1, 2024
NIH_Data_Sharing
Public
Learn about the new NIH data sharing policy, places where you might want to share your particular kind of data, and how to deal with possible challenges associated with the policy.
data-management data-sharing nih grant-proposals hutch-course itn-course audience-leaders category-bp
CSS
•
Creative Commons Attribution 4.0 International
•0•0•6•0•Updated Nov 1, 2024Nov 1, 2024
Robust_Software_Development
Public
ITN course on robust software development and giving your code base a full set of features beyond the code itself
CSS
•
Creative Commons Attribution 4.0 International
•0•0•4•0•Updated Nov 1, 2024Nov 1, 2024
Cancer_Clinical_Informatics
Public
CSS
•
MIT License
•1•0•4•1•Updated Nov 1, 2024Nov 1, 2024
GitHub_Automation_for_Scientists
Public
A course that introduces Github actions to developers of scientific worklflows and software
itn-course audience-software-developers category-sd
CSS
•
Creative Commons Attribution 4.0 International
•1•0•5•0•Updated Nov 1, 2024Nov 1, 2024
bench_to_bytes
Public
A guide for wet bench researchers about why considering computational and data science skills can be useful for all types of scientific work.
CSS
•
Creative Commons Attribution 4.0 International
•0•0•5•5•Updated Nov 1, 2024Nov 1, 2024
Containers_for_Scientists
Public
A course to introduce Docker for research purposes
CSS
•
Creative Commons Attribution 4.0 International
•0•1•0•1•Updated Oct 30, 2024Oct 30, 2024
Choosing_Genomics_Tools
Public
A course to help learners find resources and tools to help them process and interpret their genomic data
itn-course category-ftr audience-researchers
TeX
•
Creative Commons Attribution 4.0 International
•6•7•27•1•Updated Oct 30, 2024Oct 30, 2024
metricminer-dashboard
Public template
A template dashboard that helps you display your metricmined data in no time!
R
•
MIT License
•0•1•8•3•Updated Oct 21, 2024Oct 21, 2024
data_snacks
Public
Sharing cool data tricks in Python and R
JavaScript
•0•1•0•0•Updated Oct 18, 2024Oct 18, 2024
GDSCN_BioDIGS_BGC
Public
This is a BioDIGS in the Classroom companion guide for the BioDIGS project. This particular activity guides students through exploration of biosynthetic gene clusters in the BioDIGS samples using Galaxy
course module metagenomics biosynthetic-gene-clusters gdscn biodigs
CSS
•
Creative Commons Attribution 4.0 International
•0•0•1•0•Updated Oct 16, 2024Oct 16, 2024
GDSCN_BioDIGS_AMR
Public
This is a BioDIGS in the Classroom companion guide for the BioDIGS project. This particular activity guides students through an investigation of antimicrobial resistance in the BioDIGS samples using Galaxy.
course module gdscn biodigs
CSS
•
Creative Commons Attribution 4.0 International
•0•0•2•0•Updated Oct 16, 2024Oct 16, 2024