odgi 0.8.3 - Manutenuto

Buildable Source Tarball: odgi-v0.8.3.tar.gz

This release introduces a new command, odgi similarity, to compute the similarity (or dissimilarity) between paths or groups of paths. Moreover, it fixes and optimizes several commands. Importantly, now it is possible to compile odgi with Clang, on macOS and on ARM!

This introduces:

• ensure that the optimal sum_of_path_node_distances is actually 1 #466 by @subwaystation
• add yaml output for -j -w when all paths are emitted #467 by @subwaystation
• odgi stepindex: unsampled step index #468 by @AndreaGuarracino
• odgi untangle: verbose log #469 by @AndreaGuarracino
• odgi tension: set the distance to 0 after each step instead of each path #470 by @tonyjie
• fix the iteration bound: now the iter_max we set is the exact running iteration #471 by @tonyjie
• script to generate release binaries #472 by @subwaystation
• fix smoothxg-offending import #473 by @AndreaGuarracino
• odgi inject: use a key that is really unique across annotations #476 by @AndreaGuarracino
• Optimization of zeta preprocessing #480 by @nsmlzl
• Fix versioning #482 by @AndreaGuarracino
• odgi paths: initialize vector values #483 by @AndreaGuarracino
• odgi flip: avoid introducing useless edges and losing edges from the original graph #485 by @AndreaGuarracino
• odgi paths allows a specific occurrence of the delimiter #488 by @AndreaGuarracino
• fix a bug with reference-guided PG-SGD #490 by @subwaystation
• odgi overlap: fix header #492 by @AndreaGuarracino
• Portability fixes to build with Clang, on macOS, and on ARM #494 by @sampsyo
• New odgi similarity command #498 by @AndreaGuarracino