CI #2106
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| name: CI # based on https://github.com/pydata/xarray/blob/master/.github/workflows/ci.yaml | |
| on: | |
| pull_request: | |
| schedule: | |
| - cron: "0 23 * * 0" # Sun 23:00 UTC | |
| workflow_dispatch: # allows you to trigger the workflow run manually | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| detect-ci-trigger: | |
| name: detect ci trigger | |
| runs-on: ubuntu-latest | |
| if: github.event_name == 'push' || github.event_name == 'pull_request' | |
| outputs: | |
| triggered: ${{ steps.detect-trigger.outputs.trigger-found }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 2 | |
| - uses: xarray-contrib/[email protected] | |
| id: detect-trigger | |
| with: | |
| keyword: "[skip-ci]" | |
| minimum-test: # Runs testing suite with minimal dependencies | |
| name: Test minimum dependencies, python 3.9 | |
| runs-on: ubuntu-latest | |
| needs: detect-ci-trigger | |
| if: needs.detect-ci-trigger.outputs.triggered == 'false' | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 # Fetch all history for all branches and tags. | |
| - name: Set up conda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: false | |
| channels: conda-forge | |
| miniforge-variant: Mambaforge | |
| activate-environment: climpred-minimum-tests | |
| python-version: 3.9 | |
| - name: Set up conda environment | |
| run: | | |
| mamba env update -f ci/requirements/minimum-tests.yml | |
| - name: Conda info | |
| run: conda info | |
| - name: Conda list | |
| run: conda list | |
| - name: Cache datasets # pytest-xdist fails otherwise | |
| run: | | |
| python -c "import climpred; climpred.tutorial._cache_all()" | |
| - name: Run tests | |
| run: pytest -n 4 --durations=20 | |
| maximum-test: # Runs testing suite with all optional dependencies | |
| name: Test optional dependencies, python ${{ matrix.python-version }} | |
| runs-on: ubuntu-latest | |
| needs: detect-ci-trigger | |
| if: needs.detect-ci-trigger.outputs.triggered == 'false' | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| # python-version: [ "3.9", "3.10"] | |
| env: [""] | |
| include: | |
| - env: "climpred-maximum-tests" | |
| python-version: "3.9" | |
| os: ubuntu-latest | |
| - env: "climpred-maximum-tests" | |
| python-version: "3.10" | |
| os: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 # Fetch all history for all branches and tags. | |
| - name: Setup micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: ci/requirements/maximum-tests.yml | |
| environment-name: climpred-maximum-tests | |
| cache-environment: true | |
| cache-environment-key: "${{runner.os}}-${{runner.arch}}-py${{matrix.python-version}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}" | |
| create-args: >- | |
| python=${{matrix.python-version}} | |
| conda | |
| - name: Conda info | |
| run: conda info | |
| - name: Conda list | |
| run: conda list | |
| - name: install | |
| run: | | |
| python -m pip install -e .[complete] | |
| conda list xclim | |
| - name: Cache datasets # pytest-xdist fails otherwise | |
| run: python -c "import climpred; climpred.tutorial._cache_all()" | |
| - name: Run tests | |
| run: pytest -n 4 --durations=20 --cov=climpred --cov-report=xml | |
| - name: Upload coverage to codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| file: ./coverage.xml | |
| fail_ci_if_error: false | |
| doctest: # tests all docstrings | |
| name: Doctests | |
| runs-on: "ubuntu-latest" | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| channels: conda-forge | |
| miniforge-variant: Mambaforge | |
| activate-environment: climpred-maximum-tests | |
| auto-update-conda: false | |
| python-version: 3.9 | |
| - name: Install conda dependencies | |
| run: | | |
| mamba env update -f ci/requirements/maximum-tests.yml | |
| - name: Install climpred | |
| run: | | |
| python -m pip install -e .[complete] | |
| - name: Conda info | |
| run: conda info | |
| - name: Conda list | |
| run: conda list | |
| - name: Run doctests | |
| run: | | |
| python -m pytest --doctest-modules climpred --ignore climpred/tests | |
| notebooks: # Checks that pre-compiled notebooks in docs still work. | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Conda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: false | |
| channels: conda-forge | |
| miniforge-variant: Mambaforge | |
| activate-environment: climpred-docs | |
| python-version: 3.9 | |
| - name: Set up conda environment | |
| run: | | |
| mamba env update -f ci/requirements/docs.yml | |
| - name: Conda info | |
| run: conda info | |
| - name: Conda list | |
| run: conda list | |
| - name: Test notebooks in docs | |
| run: | | |
| pushd docs | |
| nbstripout source/*.ipynb source/examples/decadal/*.ipynb source/examples/monseas/*.ipynb examples/subseasonal/*ly-subx-example.html | |
| make -j4 html | |
| popd |