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Add phyloreferences curated by Rebecca Stubbs over summer 2018 #45

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917cddf
First attempt at writing out phyloref details during testing.
gaurav Dec 23, 2018
885c06c
Added support for parsing the TAP output from JPhyloRef.
gaurav Dec 23, 2018
b68916d
Add internal/external specifier count to phyloref name.
gaurav Dec 23, 2018
dada60f
Replaced index-based lookups w/ name-based lookups
gaurav Dec 23, 2018
9aab53d
Fixed indentation, added a check for a regex failure.
gaurav Jan 15, 2019
653fee6
Improve debugging output.
gaurav Jan 15, 2019
a639dfd
Moved command line synthesis closer to where it is used.
gaurav Jan 15, 2019
73dc441
Removed testing code that should not have been committed.
gaurav Jan 15, 2019
bde7406
Write out STDOUT/STDERR from JPhyloRef if failures occur.
gaurav Jan 15, 2019
3e50fa9
Write out STDOUT/STDERR unless successes reported.
gaurav Jan 15, 2019
10f0f7d
Added two new curated phyloreferences.
gaurav Jul 9, 2018
0cacca3
Minor fix for Newick, added verbatim apomorphy-based specifier
gaurav Jul 9, 2018
ff3050b
Fixed phylogeny, deleted duplicate specifier
gaurav Jul 9, 2018
0b64083
Added two new phylorefs from RS.
gaurav Jul 17, 2018
625d418
Fixed internal node label.
gaurav Jul 17, 2018
964f7d6
Added Asteridae, curated by RS.
gaurav Jul 17, 2018
038261b
Updated Amorphea from RS.
gaurav Jul 17, 2018
ecee9c9
Removed "@context" from PHYX file so we can insert our own as needed.
gaurav Jul 17, 2018
65e7064
Added Basidiomycota from RS.
gaurav Jul 17, 2018
e8598d8
Added a phyloreference from RS.
gaurav Jul 18, 2018
1fa77f4
Added phyloreference for Discicristata from RS.
gaurav Jul 25, 2018
c96603c
Fixed a typo in the phylogeny.
gaurav Jul 25, 2018
dae0013
Added Bignoniaceae from RS.
gaurav Aug 2, 2018
f0f921d
Added new phyloreferences from RS.
gaurav Aug 14, 2018
12b2a5c
Fixed code for naming '_as_owl.json' file.
gaurav Jan 18, 2019
5da0fc4
Added first attempt at complete test results.
gaurav Jan 18, 2019
2de1213
Add 1 git-crypt collaborator
gaurav Dec 21, 2019
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61 changes: 61 additions & 0 deletions package-lock.json

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3 changes: 2 additions & 1 deletion package.json
Original file line number Diff line number Diff line change
Expand Up @@ -19,7 +19,8 @@
"homepage": "https://github.com/phyloref/clade-ontology#readme",
"dependencies": {
"chai": "^4.2.0",
"mocha": "^5.2.0"
"mocha": "^5.2.0",
"tap-parser": "^7.0.0"
},
"devDependencies": {
"d3": "^5.7.0",
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