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Dev #1

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Dev #1

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ccrobertson
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Hi Peter. I'm testing out pull requests with a very minor update -- adding "mode: 'rellink', overwrite = true" to the "qc" and "plot_qc" processes. This is just to be consistent with the other processes in main.nf.

You may want to reject this request because it also changes the nextflow.config file. I have tried to ignore the config file by adding a .gitignore file... but it isn't achieving what I had hoped. I think because the file is already tracked in the repository, so I would have to remove it before ignoring it

@porchard
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Thanks -- you should be able to create a PR that just includes the first commit, since that's the one you want?

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