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Update README.md
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andrewjpage authored Sep 21, 2016
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Expand Up @@ -14,7 +14,7 @@ A docker container is provided with all of the dependancies setup and installed.

To run the script from within the container on test data (substituting /home/ubuntu/data for your own directory):

`docker run --rm -it -v /home/ubuntu/data:/data sangerpathogens/gff3toembl gff3_to_embl --output_filename /data/output_file.embl ABC 123 PRJ1234 ABC /opt/gff3toembl-1.0.9/gff3toembl/tests/data/single_feature.gff`
`docker run --rm -it -v /home/ubuntu/data:/data sangerpathogens/gff3toembl gff3_to_embl --output_filename /data/output_file.embl ABC 123 PRJ1234 ABC /opt/gff3toembl-1.1.0/gff3toembl/tests/data/single_feature.gff`

### From source
This is for advanced users. The [homebrew recipe](https://raw.githubusercontent.com/andrewjpage/homebrew-science/gff3toembl/gff3toembl.rb), [Dockerfile](Dockerfile) and the [TravisCI install dependancies script](install_dependencies.sh) all contain steps to setup depenancies and install the software so might be worth looking at for hints.
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