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Change VCF output format

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@bewt85 bewt85 released this 17 Jul 15:49
· 130 commits to master since this release

Introduces a breaking change to the VCF output format to make it compatible with other tools such as PLINK and PyVCF.

The new format outputs a VCF in GT FORMAT rather than noting Alt Base INFO. An example of this change can be found here: 09dee85