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1. nbTransmission nbTransmission Public

   R package for the naive Bayes (NB) transmission method: estimating relative transmission probabilities, reproductive number, and serial interval.

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2. nbSimulation nbSimulation Public

   Code to simulate outbreak data which were used to develop and assess the NB transmission method.

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3. BSA_Seminar BSA_Seminar Public

   Teaching repo for seminar on 5/30/19

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4. nbPaper1 nbPaper1 Public

   Code to run simulations of the NB transmission method with reproductive number estimation and applying it to a TB outbreak in Hamburg, Germany (Leavitt et al. 2020, IJE).

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5. nbPaper2 nbPaper2 Public

   Code to run the simulations of using the NB transmission method to estimate the generation/serial interval and applying it to TB surveillance data from Massachusetts (Leavitt et al. ????).

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6. nbPaper3 nbPaper3 Public

   Code to run the simulations of using the naive Bayes to estimate the association between covariates and transmission and applying it to Hamburg TB outbreak and Massachusetts TB surveillance data (L…

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