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scanpy 1.10 compat + PR CI #450

scanpy 1.10 compat + PR CI

scanpy 1.10 compat + PR CI #450

Workflow file for this run

name: Python package
on:
push:
branches: [master]
pull_request:
branches: [master]
schedule:
- cron: "0 5 1,15 * *"
jobs:
build:
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
python-version: [3.8, 3.12]
steps:
- uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v1
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
python -m pip install --upgrade pip
python -m pip install ".[test]"
# python -m pip install mofapy2
python -m pip install git+https://github.com/bioFAM/mofapy2
python -m pip install git+https://github.com/scverse/mudata
- name: List dependencies
run: |
pip list
- name: Lint with flake8
run: |
# stop the build if there are Python syntax errors or undefined names
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
- name: Test with pytest
run: |
pytest