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MVP for morpohology module #866

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MVP for morpohology module #866

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Commits on Aug 7, 2024

  1. MVP for internal calling of extra props

    @timtreis
    timtreis committed Aug 7, 2024
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  2. [pre-commit.ci] auto fixes from pre-commit.com hooks 

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    pre-commit-ci[bot] committed Aug 7, 2024
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Commits on Aug 8, 2024

  1. Added option to externally feed in functions

    @timtreis
    timtreis committed Aug 8, 2024
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  2. merge conflict resolved

    @timtreis
    timtreis committed Aug 8, 2024
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  3. [pre-commit.ci] auto fixes from pre-commit.com hooks 

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Commits on Aug 15, 2024

  1. Merge branch 'main' into feature/add_morphology_toolbox

    @timtreis
    timtreis authored Aug 15, 2024
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Commits on Aug 16, 2024

  1. add rough functionality to write regionprops into sdata["table"].obsm… 

    … as numpy array
    @npeschke
    npeschke committed Aug 16, 2024
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Commits on Aug 23, 2024

  1. DataFrame now written to obsm instead of numpy array 

    Also fix some failing code checks
    @npeschke
    npeschke committed Aug 23, 2024
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Commits on Aug 27, 2024

  1. add granularity measurement from afermg/cp_measurements 

    https://github.com/afermg/cp_measurements/blob/main/src/cp_measure/minimal/measuregranularity.py
    @npeschke
    npeschke committed Aug 27, 2024
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Commits on Aug 29, 2024

  1. add border_occupied_factor

    @npeschke
    npeschke committed Aug 29, 2024
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  2. add sanity checks and make multiple coordinate systems work

    @npeschke
    npeschke committed Aug 29, 2024
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  3. fix assertion to accommodate new interface

    @npeschke
    npeschke committed Aug 29, 2024
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Commits on Sep 3, 2024

  1. add possibility for granularity to return multiple values per channel… 

    … and label
    @npeschke
    npeschke committed Sep 3, 2024
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  2. Merge remote-tracking branch 'origin/feature/add_morphology_toolbox' … 

    …into feature/add_morphology_toolbox
    @npeschke
    npeschke committed Sep 3, 2024
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  4. Merge branch 'main' into feature/add_morphology_toolbox

    @npeschke
    npeschke authored Sep 3, 2024
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Commits on Sep 5, 2024

  1. add "all" option for regionprops through using methods=None

    @npeschke
    npeschke committed Sep 5, 2024
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Commits on Sep 24, 2024

  1. add granularity and border_occupied_factor to _all_regionprops_names

    @npeschke
    npeschke committed Sep 24, 2024
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Commits on Oct 8, 2024

  1. refactor quantify_morphology

    @npeschke
    npeschke committed Oct 8, 2024
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  2. add zernike

    @npeschke
    npeschke committed Oct 8, 2024
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Commits on Nov 14, 2024

  1. status update

    @npeschke
    npeschke committed Nov 14, 2024
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Commits on Nov 22, 2024

  1. handle dict returns from calculate_* features

    @npeschke
    npeschke committed Nov 22, 2024
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