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update notebooks
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gaow committed Jun 15, 2023
1 parent e9f53e8 commit 6e8759c
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2 changes: 2 additions & 0 deletions docker/statgen-equations.dockerfile
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Expand Up @@ -8,6 +8,8 @@ RUN mkdir -p /home/jovyan/.work

RUN R --slave -e 'for (pkg in c("reshape2","ggplot2","grid","gridExtra","RColorBrewer", "scales", "dplyr", "rgl", "MASS", "mgcv")) install.packages(pkg)'

RUN R --slave -e "install.packages('gridExtra')"

RUN chown jovyan.users -R /home/jovyan

USER jovyan
4 changes: 2 additions & 2 deletions notebooks/MR_JTI.ipynb
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Expand Up @@ -259,7 +259,7 @@
},
"outputs": [],
"source": [
"MetaXcan.py \\\n",
"python /opt/MR_JTI/MetaXcan/software/MetaXcan.py \\\n",
" --model_db_path data/JTI_Liver.db \\\n",
" --covariance data/JTI_Liver.txt.gz \\\n",
" --gwas_file data/LDLq.txt.gz \\\n",
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""
]
],
"version": "0.22.9"
"version": "0.24.1"
}
},
"nbformat": 4,
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