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Code and data from Telenský, T., Storch, D., Klvaňa, P., Reif, J. Extension of Pradel capture-recapture survival-recruitment model accounting for transients. Methods in Ecology and Evolution. https://doi.org/10.1111/2041-210X.14262

Implementations of basic as well extended model in BUGS language for both Nimble and JAGS, along with simple examples.

  • code - R scripts to run the models using Nimble or JAGS
  • data - the data from the Case study (Czech Constant Effort Sites scheme)
  • model - basic and extended model in BUGS language

The code is not complete yet - updates are coming soon. Stay tuned!

Install instructions

  1. Install either Nimble (https://r-nimble.org/) or JAGS (along with the R package 'runjags')
  2. Install R packages:
install.packages(c("coda", "reshape2", "stringr"))
  1. Install the talonplot R package - either from a binary, if available, or from the source repository:
require(devtools)
install_github("https://github.com/telenskyt/talonplot/")

This work is available under CC-BY license. If you reuse these scripts for your work, please cite our paper.