Updating MLST #2
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| ##### ------------------------------------------------------------------------------------------------ ##### | |
| ##### This caller workflow tests, builds, and pushes the image to Docker Hub and Quay using the most ##### | |
| ##### recent version of MLST and downloads the current MLST schemes. ##### | |
| ##### It takes no manual input. ##### | |
| ##### ------------------------------------------------------------------------------------------------ ##### | |
| name: Update MLST | |
| on: | |
| workflow_dispatch: | |
| schedule: | |
| - cron: '30 7 1 * *' | |
| run-name: Updating MLST | |
| jobs: | |
| update: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: pull repo | |
| uses: actions/checkout@v4 | |
| - name: set mlst version | |
| id: latest_version | |
| run: | | |
| version=2.23.0 | |
| echo "version=$version" >> $GITHUB_OUTPUT | |
| file=mlst/2.23.0-2024-03/Dockerfile | |
| ls $file | |
| echo "file=$file" >> $GITHUB_OUTPUT | |
| - name: set up docker buildx | |
| id: buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: build to test | |
| id: docker_build_to_test | |
| uses: docker/build-push-action@v5 | |
| with: | |
| context: mlst/${{ steps.latest_version.outputs.version }} | |
| target: test | |
| load: true | |
| push: false | |
| tags: mlst:update | |
| - name: Get current date | |
| id: date | |
| run: | | |
| date=$(date '+%Y-%m-%d') | |
| echo "the date is $date" | |
| echo "date=$date" >> $GITHUB_OUTPUT | |
| - name: Login to DockerHub | |
| uses: docker/login-action@v3 | |
| with: | |
| username: ${{ secrets.DOCKER_HUB_USERNAME }} | |
| password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }} | |
| - name: Login to Quay | |
| uses: docker/login-action@v3 | |
| with: | |
| registry: quay.io | |
| username: ${{ secrets.QUAY_USERNAME }} | |
| password: ${{ secrets.QUAY_ROBOT_TOKEN }} | |
| - name: Build and push user-defined tag to DockerHub | |
| id: docker_build_user_defined_tag | |
| uses: docker/build-push-action@v5 | |
| with: | |
| file: ${{ steps.latest_version.outputs.file }} | |
| target: app | |
| push: true | |
| tags: staphb/mlst:${{ steps.latest_version.outputs.version }}-${{ steps.date.outputs.date }} | |
| - name: Build and push to Quay | |
| id: build | |
| uses: docker/build-push-action@v5 | |
| with: | |
| file: ${{ steps.latest_version.outputs.file }} | |
| target: app | |
| push: true | |
| tags: quay.io/staphb/mlst:${{ steps.latest_version.outputs.version }}-${{ steps.date.outputs.date }} | |
| - name: Image digest | |
| run: echo ${{ steps.docker_build.outputs.digest }} |