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added 2 QC thresholds to ANI task to reduce false positives Pytest Workflows #589: Pull request #168 synchronize by kapsakcj
October 10, 2023 16:36 21m 14s cjk-ani-threshold
cjk-ani-threshold
October 10, 2023 16:36 21m 14s
added 2 QC thresholds to ANI task to reduce false positives Pytest Workflows #588: Pull request #168 synchronize by kapsakcj
October 10, 2023 16:16 24m 5s cjk-ani-threshold
cjk-ani-threshold
October 10, 2023 16:16 24m 5s
added 2 QC thresholds to ANI task to reduce false positives Pytest Workflows #587: Pull request #168 synchronize by kapsakcj
October 10, 2023 16:04 20m 14s cjk-ani-threshold
cjk-ani-threshold
October 10, 2023 16:04 20m 14s
Remove the genes and colors input files Pytest Workflows #586: Pull request #212 opened by sage-wright
October 10, 2023 14:26 23s smw-fix-augur-dev
smw-fix-augur-dev
October 10, 2023 14:26 23s
KmerFinder to TheiaProk (#188) Pytest Workflows #585: Commit 7828f47 pushed by michellescribner
October 9, 2023 18:01 19m 36s main
main
October 9, 2023 18:01 19m 36s
reduce unnecessary logging in MIDAS task Pytest Workflows #584: Pull request #210 synchronize by kapsakcj
October 6, 2023 21:35 16m 21s cjk-hush-midas
cjk-hush-midas
October 6, 2023 21:35 16m 21s
reduce unnecessary logging in MIDAS task Pytest Workflows #583: Pull request #210 opened by kapsakcj
October 6, 2023 21:22 15m 3s cjk-hush-midas
cjk-hush-midas
October 6, 2023 21:22 15m 3s
Fix bugs in read proportion calculation - read_screen task Pytest Workflows #582: Pull request #209 synchronize by cimendes
October 6, 2023 12:56 42m 33s im-fix-qc-screen
im-fix-qc-screen
October 6, 2023 12:56 42m 33s
updated VCF output file renaming in kSNP3 task Pytest Workflows #581: Pull request #207 synchronize by kapsakcj
October 5, 2023 19:46 15s cjk-ksnp3-vcf
cjk-ksnp3-vcf
October 5, 2023 19:46 15s
Fix bugs in read proportion calculation - read_screen task Pytest Workflows #580: Pull request #209 synchronize by cimendes
October 4, 2023 16:42 17m 51s im-fix-qc-screen
im-fix-qc-screen
October 4, 2023 16:42 17m 51s
Fix bugs in read proportion calculation - read_screen task Pytest Workflows #579: Pull request #209 opened by cimendes
October 4, 2023 16:26 1h 50m 26s im-fix-qc-screen
im-fix-qc-screen
October 4, 2023 16:26 1h 50m 26s
update default nextclade dataset tag to "2023-09-21T12:00:00Z" for all TheiaCov wfs Pytest Workflows #578: Pull request #208 opened by kapsakcj
October 4, 2023 15:45 21m 9s cjk-nextclade-sc2-tag-update-default
cjk-nextclade-sc2-tag-update-default
October 4, 2023 15:45 21m 9s
updated VCF output file renaming in kSNP3 task Pytest Workflows #577: Pull request #207 opened by kapsakcj
October 4, 2023 15:38 15s cjk-ksnp3-vcf
cjk-ksnp3-vcf
October 4, 2023 15:38 15s
Merge pull request #205 from theiagen/im-revert-ncbi-scrub Pytest Workflows #576: Commit 801baa2 pushed by kapsakcj
October 2, 2023 20:04 22m 58s main
main
October 2, 2023 20:04 22m 58s
Merge pull request #204 from theiagen/smw-version-dev Pytest Workflows #575: Commit 64d5810 pushed by kapsakcj
October 2, 2023 16:50 19m 49s main
main
October 2, 2023 16:50 19m 49s
update PHB version Pytest Workflows #574: Pull request #204 synchronize by kapsakcj
October 2, 2023 16:27 22m 8s smw-version-dev
smw-version-dev
October 2, 2023 16:27 22m 8s
revert ncbi scrub changes to commid id 4e0fa54cb Pytest Workflows #573: Pull request #205 opened by cimendes
October 2, 2023 16:15 18m 57s im-revert-ncbi-scrub
im-revert-ncbi-scrub
October 2, 2023 16:15 18m 57s
update PHB version Pytest Workflows #572: Pull request #204 opened by sage-wright
October 2, 2023 15:40 20m 52s smw-version-dev
smw-version-dev
October 2, 2023 15:40 20m 52s
switch default docker image for version_capture to GAR-hosted image (… Pytest Workflows #571: Commit 4f1c834 pushed by frankambrosio3
October 2, 2023 13:40 16m 27s main
main
October 2, 2023 13:40 16m 27s
add -n to echo command in kmc to avoid new line (#201) Pytest Workflows #570: Commit 0151682 pushed by frankambrosio3
October 2, 2023 11:49 22s main
main
October 2, 2023 11:49 22s
KmerFinder to TheiaProk Pytest Workflows #569: Pull request #188 synchronize by cimendes
October 2, 2023 11:10 16m 35s im-kmerfinder
im-kmerfinder
October 2, 2023 11:10 16m 35s
update ncbi-scrub task (version 2.2.1) Pytest Workflows #568: Pull request #202 opened by cimendes
October 2, 2023 08:36 6h 0m 26s im-ncbi-scrub-update
im-ncbi-scrub-update
October 2, 2023 08:36 6h 0m 26s
add -n to echo command in kmc to avoid new line Pytest Workflows #567: Pull request #201 opened by frankambrosio3
September 30, 2023 20:13 17s fja-kmc-fix
fja-kmc-fix
September 30, 2023 20:13 17s
adjusted call block for quast in theiaeuk_illumina_pe_PHB workflow: m… Pytest Workflows #566: Commit 2affecc pushed by frankambrosio3
September 29, 2023 19:57 13s main
main
September 29, 2023 19:57 13s
adjusted call block for quast in theiaeuk_illumina_pe_PHB workflow: m… Pytest Workflows #565: Pull request #200 opened by kapsakcj
September 29, 2023 19:53 18s cjk-quast-theiaeuk-fix
cjk-quast-theiaeuk-fix
September 29, 2023 19:53 18s
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