remove duplicate set -euo pipefail

theiagen · Dec 16, 2024 · b230816 · b230816
1 parent e2407d4
commit b230816
Showing 1 changed file with 0 additions and 2 deletions.
diff --git a/tasks/utilities/file_handling/task_cat_lanes.wdl b/tasks/utilities/file_handling/task_cat_lanes.wdl
@@ -28,8 +28,6 @@ task cat_lanes {
 
     exists() { [[ -f $1 ]]; }
 
-    set -euo pipefail
-
     cat ~{read1_lane1} ~{read1_lane2} ~{read1_lane3} ~{read1_lane4} > "~{samplename}_merged_R1.fastq.gz"
 
     if exists "~{read2_lane1}" ; then