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theiagen / public_health_bioinformatics Public

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[Augur] Add augur tree iqtree model type to output#674

Merged

sage-wright merged 7 commits intomaintheiagen/public_health_bioinformatics:mainfrom mb-augur-automodel-output-devtheiagen/public_health_bioinformatics:mb-augur-automodel-output-devCopy head branch name to clipboard

Nov 14, 2024

+19-1

Conversation Commits7 (7)Checks Files changed

Commits

Commits on Nov 8, 2024

Add iqtree model extraction to augur_tree task and update workflow output
Michal-Babins
committed
Refactor augur_tree task to correctly derive FASTA basename and directory for iqtree model extraction
Michal-Babins
committed

Commits on Nov 12, 2024

Add iqtree model used field to augur workflow documentation
Michal-Babins
committed
Handle empty substitution model case in augur_tree task
Michal-Babins
committed
Ensure iqtree_model_used is a non-nullable String in augur_tree task and workflow
Michal-Babins
committed

Commits on Nov 14, 2024

Update augur workflow documentation to include model options for substitution model and rename iqtree model variable for clarity
Michal-Babins
committed
Add augur_iqtree_model_used variable to documentation for clarity
Michal-Babins
committed

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