v1.4.0
This release introduces two new workflows: SRA_Fetch and Terra_2_NCBI.
New Workflows
SRA_Fetch
The SRA_Fetch workflow is a seamless way to transfer SRA read files into your Terra workspace using a Terra workflow. Simply provide an SRA accession number(s) as input(s), and the workflow will return the associated read files for each accession.
This workflow makes uses of the fastq-dl tool by Robert Petit. It is able to download FASTQ files from either ENA (the European Nucleotide Archive) or SRA (the Sequence Read Archive hosted by NCBI).
Terra_2_NCBI
The Terra_2_NCBI workflow is a programmatic data submission method to share and metadata information with NCBI BioSample and paired-end Illumina reads with NCBI SRA directly from Terra without having to use the NCBI portal.
The Terra_2_NCBI workflow has several prerequisites, which are listed in detail on the documentation page. It is highly recommended to set up a meeting with Theiagen to understand in greater detail what is required.
Once those prerequisites have been met, this workflow enables swift and easy submission to NCBI’s BioSample and SRA databases.
Check out our new and detailed documentation for all workflows offered in the Terra Utilities repository. Please note some are still under construction but will be updated soon!
What's Changed
- Create Transfer Column Content workflow by @kevinlibuit in #17 (internal use)
- Add SRA_Fetch workflow by @kevinlibuit in #25
- the Terra_2_NCBI workflow by @sage-wright in #26
- Update version by @sage-wright in #30
New Contributors
- @sage-wright made their first contribution in #26
Full Changelog: v1.3.4...v1.4.0
