unpin mypy from requirements, xfail on unstable tests #2073
Workflow file for this run
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| name: CI Tests | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - dev | |
| - bugfix | |
| - "release/*" | |
| pull_request: | |
| branches: | |
| - main | |
| - dev | |
| - bugfix | |
| - "release/*" | |
| env: | |
| DEFAULT_PYTHON: 3.8 | |
| CI: "true" | |
| # Increase this value to reset cache if environment.yml has not changed | |
| CACHE_VERSION: 6 | |
| concurrency: | |
| group: '${{ github.workflow }} @ ${{ github.event.pull_request.head.label || github.head_ref || github.ref }}' | |
| cancel-in-progress: true | |
| jobs: | |
| lint: | |
| name: Linters (${{ matrix.python-version }}) | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| python-version: ["3.8", "3.9", "3.10", "3.11"] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: actions/cache@v3 | |
| with: | |
| path: ~/.cache/pip # ubuntu location | |
| key: ${{ runner.os }}-pip-${{ hashFiles('requirements-dev.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install nox pre_commit \ | |
| mypy==0.982 \ | |
| types-click \ | |
| types-pyyaml \ | |
| types-pkg_resources \ | |
| types-requests \ | |
| types-pytz | |
| - name: Pip info | |
| run: python -m pip list | |
| - name: Check requirements | |
| run: > | |
| nox | |
| -db virtualenv -r | |
| --non-interactive | |
| --python ${{ matrix.python-version }} | |
| --session requirements-${{ matrix.python-version }} | |
| - name: Sort Imports | |
| run: pre-commit run isort --all-files | |
| - name: Black | |
| if: always() | |
| run: pre-commit run black --all-files | |
| - name: Pylint | |
| if: always() | |
| run: pre-commit run pylint --all-files | |
| - name: Mypy Type Checking | |
| if: always() | |
| run: pre-commit run mypy --all-files | |
| tests: | |
| name: > | |
| CI Tests (${{ matrix.python-version }}, ${{ matrix.os }}, pandas-${{ matrix.pandas-version }}, pydantic-${{ matrix.pydantic-version }}) | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: pwsh | |
| env: | |
| PYTHONUTF8: 1 | |
| NOX_FLAGS: -v --no-install --no-venv --non-interactive | |
| PYTEST_FLAGS: --cov=pandera --cov-report=term-missing --cov-report=xml --cov-append | |
| HYPOTHESIS_FLAGS: -n=auto -q --hypothesis-profile=ci | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| os: ["ubuntu-latest", "macos-latest", "windows-latest"] | |
| python-version: ["3.7", "3.8", "3.9", "3.10", "3.11"] | |
| pandas-version: ["1.5.3", "2.0.3"] | |
| pydantic-version: ["1.10.11", "2.3.0"] | |
| exclude: | |
| - python-version: "3.7" | |
| pandas-version: "2.0.3" | |
| - python-version: "3.7" | |
| pandas-version: "1.5.2" | |
| - python-version: "3.10" | |
| pandas-version: "1.3.0" | |
| - python-version: "3.11" | |
| pandas-version: "1.3.0" | |
| include: | |
| - os: ubuntu-latest | |
| pip-cache: ~/.cache/pip | |
| - os: macos-latest | |
| pip-cache: ~/Library/Caches/pip | |
| - os: windows-latest | |
| pip-cache: ~/AppData/Local/pip/Cache | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Cache conda | |
| uses: actions/cache@v3 | |
| env: | |
| # Increase this value to reset cache if etc/environment.yml has not changed | |
| CACHE_NUMBER: 2 | |
| with: | |
| path: ~/conda_pkgs_dir | |
| key: ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('environment.yml') }} | |
| id: cache | |
| - name: Cache pip | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ matrix.pip-cache }} | |
| key: ${{ runner.os }}-pip-${{ hashFiles('requirements-dev.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| miniforge-version: latest | |
| miniforge-variant: Mambaforge | |
| use-mamba: true | |
| activate-environment: pandera-dev | |
| channels: conda-forge | |
| channel-priority: true | |
| use-only-tar-bz2: true | |
| # ray currently cannot be installed on python 3.11 | |
| - name: Remove Ray from Deps | |
| if: ${{ matrix.python-version == '3.11' && matrix.os != 'macos-latest' }} | |
| run: sed -i '/ray/d' environment.yml | |
| - name: Remove Ray from Deps | |
| if: ${{ matrix.python-version == '3.11' && matrix.os == 'macos-latest' }} | |
| run: sed -i .bak '/ray/d' environment.yml | |
| # need to install pandas via pip: conda installation is on the fritz | |
| - name: Install Conda Deps [pandas 2] | |
| if: ${{ matrix.pandas-version == '2.0.3' }} | |
| run: | | |
| mamba install -c conda-forge asv pandas geopandas bokeh | |
| mamba env update -n pandera-dev -f environment.yml | |
| pip install pandas==${{ matrix.pandas-version }} | |
| pip install --user dask>=2023.3.2 | |
| - name: Install Conda Deps | |
| if: ${{ matrix.pandas-version != '2.0.3' }} | |
| run: | | |
| mamba install -c conda-forge asv pandas==${{ matrix.pandas-version }} geopandas bokeh | |
| mamba env update -n pandera-dev -f environment.yml | |
| - name: Install Pydantic Deps | |
| run: pip install -U --upgrade-strategy only-if-needed pydantic==${{ matrix.pydantic-version }} | |
| - name: Install Pydantic v2 Deps | |
| if : ${{ matrix.pydantic-version == '2.3.0' }} | |
| run: pip install fastapi>=0.100.0 | |
| - run: | | |
| conda info | |
| conda list | |
| conda config --show-sources | |
| conda config --show | |
| printenv | sort | |
| - name: Unit Tests - Core | |
| run: pytest tests/core ${{ env.PYTEST_FLAGS }} | |
| - name: Unit Tests - Hypotheses | |
| run: pytest tests/hypotheses ${{ env.PYTEST_FLAGS }} | |
| - name: Unit Tests - IO | |
| run: pytest tests/io ${{ env.PYTEST_FLAGS }} | |
| - name: Unit Tests - Mypy | |
| if: ${{ matrix.python-version != '3.7' }} | |
| run: pytest -v tests/mypy ${{ env.PYTEST_FLAGS }} | |
| - name: Unit Tests - Strategies | |
| run: pytest tests/strategies ${{ env.PYTEST_FLAGS }} ${{ env.HYPOTHESIS_FLAGS }} | |
| - name: Unit Tests - FastAPI | |
| # there's an issue with the fastapi tests in CI that's not reproducible locally | |
| # when pydantic > v2 | |
| if: ${{ matrix.python-version != '3.7' }} | |
| run: pytest tests/fastapi ${{ env.PYTEST_FLAGS }} | |
| - name: Unit Tests - GeoPandas | |
| run: pytest tests/geopandas ${{ env.PYTEST_FLAGS }} | |
| - name: Unit Tests - Dask | |
| if: ${{ matrix.pandas-version != '2.0.3' }} | |
| run: pytest tests/dask ${{ env.PYTEST_FLAGS }} | |
| - name: Unit Tests - Pyspark | |
| if: ${{ matrix.os != 'windows-latest' && !contains(fromJson('["3.7", "3.10", "3.11"]'), matrix.python-version) && matrix.pandas-version != '2.0.3' }} | |
| run: pytest tests/pyspark ${{ env.PYTEST_FLAGS }} | |
| - name: Unit Tests - Modin-Dask | |
| if: ${{ !contains(fromJson('["3.11"]'), matrix.python-version) && matrix.pandas-version != '2.0.3' }} | |
| run: pytest tests/modin ${{ env.PYTEST_FLAGS }} | |
| env: | |
| CI_MODIN_ENGINES: dask | |
| # - name: Unit Tests - Modin-Ray | |
| # # ray CI issues with the following: | |
| # # - windows, python 3.10 | |
| # # - mac, python 3.7 | |
| # # Tracking issue: https://github.com/modin-project/modin/issues/5466 | |
| # if: ${{ matrix.os != 'windows-latest' && !contains(fromJson('["3.7", "3.10", "3.11"]'), matrix.python-version) && matrix.pandas-version != '2.0.1' }} | |
| # run: pytest tests/modin ${{ env.PYTEST_FLAGS }} | |
| # env: | |
| # CI_MODIN_ENGINES: ray | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| - name: Check Docstrings | |
| if: ${{ matrix.os != 'windows-latest' && !contains(fromJson('["3.7", "3.10", "3.11"]'), matrix.python-version) && matrix.pydantic-version != '2.0.2' }} | |
| run: nox ${{ env.NOX_FLAGS }} --session doctests | |
| - name: Check Docs | |
| if: ${{ matrix.os != 'windows-latest' && !contains(fromJson('["3.7", "3.10", "3.11"]'), matrix.python-version) && matrix.pydantic-version != '2.0.2' }} | |
| run: nox ${{ env.NOX_FLAGS }} --session docs |