[BUGFIX] [PYSPARK] Avoid running nullable checks if nullable=True
#2178
Workflow file for this run
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name: CI Tests | |
on: | |
push: | |
branches: | |
- main | |
- dev | |
- bugfix | |
- "release/*" | |
pull_request: | |
branches: | |
- main | |
- dev | |
- bugfix | |
- "release/*" | |
env: | |
DEFAULT_PYTHON: 3.8 | |
CI: "true" | |
# Increase this value to reset cache if environment.yml has not changed | |
CACHE_VERSION: 6 | |
concurrency: | |
group: '${{ github.workflow }} @ ${{ github.event.pull_request.head.label || github.head_ref || github.ref }}' | |
cancel-in-progress: true | |
jobs: | |
lint: | |
name: Linters (${{ matrix.python-version }}) | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: true | |
matrix: | |
python-version: ["3.8", "3.9", "3.10", "3.11"] | |
defaults: | |
run: | |
shell: bash -l {0} | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- uses: actions/cache@v3 | |
with: | |
path: ~/.cache/pip # ubuntu location | |
key: ${{ runner.os }}-pip-${{ hashFiles('requirements-dev.txt') }} | |
restore-keys: | | |
${{ runner.os }}-pip- | |
- name: Install dependencies | |
run: | | |
python -m pip install nox pre_commit \ | |
mypy==0.982 \ | |
types-click \ | |
types-pyyaml \ | |
types-pkg_resources \ | |
types-requests \ | |
types-pytz | |
- name: Pip info | |
run: python -m pip list | |
- name: Check requirements | |
run: > | |
nox | |
-db virtualenv -r | |
--non-interactive | |
--python ${{ matrix.python-version }} | |
--session requirements-${{ matrix.python-version }} | |
- name: Sort Imports | |
run: pre-commit run isort --all-files | |
- name: Black | |
if: always() | |
run: pre-commit run black --all-files | |
- name: Pylint | |
if: always() | |
run: pre-commit run pylint --all-files | |
- name: Mypy Type Checking | |
if: always() | |
run: pre-commit run mypy --all-files | |
tests: | |
name: > | |
CI Tests (${{ matrix.python-version }}, ${{ matrix.os }}, pandas-${{ matrix.pandas-version }}, pydantic-${{ matrix.pydantic-version }}) | |
runs-on: ${{ matrix.os }} | |
defaults: | |
run: | |
shell: pwsh | |
env: | |
PYTHONUTF8: 1 | |
NOX_FLAGS: -v --no-install --no-venv --non-interactive | |
PYTEST_FLAGS: --cov=pandera --cov-report=term-missing --cov-report=xml --cov-append | |
HYPOTHESIS_FLAGS: -n=auto -q --hypothesis-profile=ci | |
strategy: | |
fail-fast: true | |
matrix: | |
os: ["ubuntu-latest", "macos-latest", "windows-latest"] | |
python-version: ["3.8", "3.9", "3.10", "3.11"] | |
pandas-version: ["1.5.3", "2.0.3"] | |
pydantic-version: ["1.10.11", "2.3.0"] | |
include: | |
- os: ubuntu-latest | |
pip-cache: ~/.cache/pip | |
- os: macos-latest | |
pip-cache: ~/Library/Caches/pip | |
- os: windows-latest | |
pip-cache: ~/AppData/Local/pip/Cache | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Cache conda | |
uses: actions/cache@v3 | |
env: | |
# Increase this value to reset cache if etc/environment.yml has not changed | |
CACHE_NUMBER: 2 | |
with: | |
path: ~/conda_pkgs_dir | |
key: ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('environment.yml') }} | |
id: cache | |
- name: Cache pip | |
uses: actions/cache@v3 | |
with: | |
path: ${{ matrix.pip-cache }} | |
key: ${{ runner.os }}-pip-${{ hashFiles('requirements-dev.txt') }} | |
restore-keys: | | |
${{ runner.os }}-pip- | |
- name: Install deps | |
run: pip install -r ci/requirements-py${{ matrix.python-version }}-pandas${{ matrix.pandas-version }}-pydantic${{ matrix.pydantic-version }}.txt | |
- run: | | |
pip list | |
printenv | sort | |
- name: Unit Tests - Core | |
run: pytest tests/core ${{ env.PYTEST_FLAGS }} | |
- name: Unit Tests - Hypotheses | |
run: pytest tests/hypotheses ${{ env.PYTEST_FLAGS }} | |
- name: Unit Tests - IO | |
run: pytest tests/io ${{ env.PYTEST_FLAGS }} | |
- name: Unit Tests - Mypy | |
# mypy tests hang on windows | |
if: ${{ matrix.os != 'windows-latest' }} | |
run: pytest -v tests/mypy ${{ env.PYTEST_FLAGS }} | |
- name: Unit Tests - Strategies | |
run: pytest tests/strategies ${{ env.PYTEST_FLAGS }} ${{ env.HYPOTHESIS_FLAGS }} | |
- name: Unit Tests - FastAPI | |
# there's an issue with the fastapi tests in CI that's not reproducible locally | |
# when pydantic > v2 | |
run: pytest tests/fastapi ${{ env.PYTEST_FLAGS }} | |
- name: Unit Tests - GeoPandas | |
run: pytest tests/geopandas ${{ env.PYTEST_FLAGS }} | |
- name: Unit Tests - Dask | |
if: ${{ matrix.pandas-version != '2.0.3' }} | |
run: pytest tests/dask ${{ env.PYTEST_FLAGS }} | |
- name: Unit Tests - Pyspark | |
if: ${{ matrix.os != 'windows-latest' && matrix.pandas-version != '2.0.3' }} | |
run: pytest tests/pyspark ${{ env.PYTEST_FLAGS }} | |
- name: Unit Tests - Modin-Dask | |
if: ${{ matrix.pandas-version != '2.0.3' }} | |
run: pytest tests/modin ${{ env.PYTEST_FLAGS }} | |
env: | |
CI_MODIN_ENGINES: dask | |
- name: Unit Tests - Modin-Ray | |
# ray CI issues with the following: | |
# - windows, python 3.10 | |
# Tracking issue: https://github.com/modin-project/modin/issues/5466 | |
if: ${{ matrix.os != 'windows-latest' && matrix.pandas-version != '2.0.3' }} | |
run: pytest tests/modin ${{ env.PYTEST_FLAGS }} | |
env: | |
CI_MODIN_ENGINES: ray | |
- name: Upload coverage to Codecov | |
uses: codecov/codecov-action@v3 | |
- name: Check Docstrings | |
if: ${{ matrix.os != 'windows-latest' && matrix.python-version == '3.11' && matrix.pandas-version == '2.0.3' }} | |
run: nox ${{ env.NOX_FLAGS }} --session doctests | |
- name: Check Docs | |
if: ${{ matrix.os != 'windows-latest' && matrix.python-version == '3.11' && matrix.pydantic-version == '2.0.3' }} | |
run: nox ${{ env.NOX_FLAGS }} --session docs |