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Integrate steppyngstounes and azure #830

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Integrate steppyngstounes and azure #830

wants to merge 176 commits into from

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guyer
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@guyer guyer commented Nov 23, 2021

Integration tests of #777 and #822

@guyer
Convert binary phase field example to use steppyngstounes
8e5dca6
@guyer
Convert to quadratic time stepper for very long times
6e94f85
@guyer
Visualize interface position
ba57a51
@guyer
Add discussion of binary phase field behavior
665c04d
@guyer
Add mass conservation to step size control
2b81705
@guyer
Reduce simulation time
bc4e900 
It's done for all intents and purposes
@guyer
Create a custom viewer
4edca5a
@guyer
Correct description of time steps
97b6b6f 
Time steps increase geometrically, not parabolically.
Parabolically increasing timesteps (`dt0 * (n/2)**2`) do not
perform as well.
@guyer
Explain merits of steppyngstounes
fa4c4d4
@guyer
Apply steppyngstounes to binaryCoupled
875174a
@guyer
Update figures for binary phase field examples
3656079
@guyer
Revise description of solidification evolution
b465d7e
@guyer
Deprecate fipy.steppers
cd469d6 
Can't deprecate base class for some reason. Don't really need to.
@guyer
Add discussion of adaptive stepping to USAGE
e1ff04a
@guyer
Fix spelling errors
8e18563
@guyer
Install steppyngstounes on CIs
272e249
@guyer
Discard result of succeeded()
f72d1f8
@guyer
Fix typo
1ca252d
@guyer
Fix math
1f5a3c5
@guyer
Ensure mass conservation of early evolution
5682e25
@guyer
Fix LaTeX
4fe044b
@guyer
Fix LaTeX
e6842e9
@guyer
Set up CI with Azure Pipelines
7e8a4b9 
[skip ci]
@guyer
Update pipelines.yml for Azure Pipelines
e8c0afd
@guyer
Switch to mamba
84092c5
@guyer
Fix mamba install options
cc9d749
@guyer
Just install fipy
cecd184
@guyer
Fix strategy name
306f2ea
@guyer
Split mamba installation into two steps
d79440b
@guyer
Tell mamba yes
cbd593f
@guyer
Revert "Try caching"
a6db1a8 
This reverts commit 50110f2.
@guyer
Make installation a dependency
47b69df
@guyer
Revert "Make installation a dependency"
dc4fc2d 
This reverts commit 47b69df.
@guyer
Add jobs
3c00678
@guyer
Activate environment
91ff628
@guyer
Build unix binaries
ff11bee
@guyer
Build windows distribution
ae2abe7
@guyer
Separately publish artifacts
9aa26d9
@guyer
Install pytrilinos under Python 3.7
c224d50
@guyer
Ensure mamba installed with correct python
7723d24
@guyer
Distinguish artifacts correctly
8cee89c
@guyer
Ping the build
e944573
@guyer
Disable f-string warning in pylint
554270f
@guyer
Fix pylint section name
2128fd4
@guyer
Attempt to only pip on Py3k
0544d29
@guyer
Fix conditional
605cacc
@guyer
mamba install from Py3k
7c14c05 
mamba doesn't work right from within a Python 2.7 environment
@guyer
Install mamba in base environment
c8af557
@guyer
install mamba with mamba
4b2bf8d 
Troubleshooting how environment has changed from 605cacc
@guyer
Install libGL on linux
16257a9
@guyer
Install libGL as sudoer
be2b76e
@guyer
Differentiate windows mamba install
5a52c54
@guyer
Differentiate Py2.7 and Py3k mamba installs
33f408e 
mamba doesn't work from a Py2.7 environment,
but mamba needs to be installed in a Py3k environment for some reason
@guyer
Fix syntax for mamba installs from active environment
cc718ca
@guyer
Remove older, slower CIs
d5d5470 
TravisCI, in particular, appears to have
[abandoned](https://blog.travis-ci.com/2020-11-02-travis-ci-new-billing)
[Open Source](https://docs.travis-ci.com/user/billing-overview/)
@guyer
Merge branch 'issue620-Working_example_of_adaptive_stepper-use_steppy…
fecc481 
…ngstounes' into integrate_steppyngstounes_and_azure
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guyer commented Nov 23, 2021

  • Substantially slower
  • Trilinos parallel breaks: 
     Traceback (most recent call last):
   File "/usr/share/miniconda/envs/myEnvironment/lib/python3.7/doctest.py", line 1337, in __run
     compileflags, 1), test.globs)
   File "<doctest examples.phase.binaryCoupled[93]>", line 7, in <module>
     res = eq.sweep(dt=step.size, solver=solver)
   File "/home/vsts/work/1/s/fipy/terms/term.py", line 214, in sweep
     solver = self._prepareLinearSystem(var=var, solver=solver, boundaryConditions=boundaryConditions, dt=dt)
   File "/home/vsts/work/1/s/fipy/terms/term.py", line 130, in _prepareLinearSystem
     buildExplicitIfOther=self._buildExplcitIfOther)
   File "/home/vsts/work/1/s/fipy/terms/coupledBinaryTerm.py", line 88, in _buildAndAddMatrices
     buildExplicitIfOther=buildExplicitIfOther)
   File "/home/vsts/work/1/s/fipy/terms/binaryTerm.py", line 34, in _buildAndAddMatrices
     buildExplicitIfOther=buildExplicitIfOther)
   File "/home/vsts/work/1/s/fipy/terms/unaryTerm.py", line 67, in _buildAndAddMatrices
     diffusionGeomCoeff=diffusionGeomCoeff)
   File "/home/vsts/work/1/s/fipy/terms/cellTerm.py", line 128, in _buildMatrix
     dt = self._checkDt(dt)
   File "/home/vsts/work/1/s/fipy/terms/transientTerm.py", line 128, in _checkDt
     raise TypeError("`dt` must be a single number, not a " + type(dt).__name__)
 TypeError: `dt` must be a single number, not a ndarray

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guyer commented Nov 30, 2021

#777 builds on azure, now

@guyer guyer closed this Nov 30, 2021
@guyer guyer deleted the integrate_steppyngstounes_and_azure branch December 1, 2021 23:53
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