Detect LCCS (Local Clustering of Cytosine Sites) from WGBS/RRBS cytosine position data
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This program is used to detect Local Clustering of Cytosine Sites (LCCS) of
single nucletide resolution methylation sequencing data
Usage: Rscript --vanilla LCCS.R minCNum maxSize posFile
Parameters:
minCNum, the minimal Cytosine Number in a LCCS, default value is 3
maxSize, the maxmize size of a LCCS, default value is 500bp
posFile, the file includes positions of all cytosine, and at lest two column, like
chr1 1
chr1 5
...
##################################################################################### Reference: doi: 10.1093/hmg/ddv172 copyright @ Xiaofei Yang, [email protected]