Skip to content

Merge branch 'main' of https://github.com/AllenNeuralDynamics/aind-sm… #10

Merge branch 'main' of https://github.com/AllenNeuralDynamics/aind-sm…

Merge branch 'main' of https://github.com/AllenNeuralDynamics/aind-sm… #10

name: Tag and publish
on:
push:
branches:
- main
jobs:
update_badges:
runs-on: ubuntu-latest
continue-on-error: true
steps:
- uses: actions/checkout@v3
with:
ref: ${{ env.DEFAULT_BRANCH }}
fetch-depth: 0
token: ${{ secrets.SERVICE_TOKEN }}
- name: Set up Python 3.10
uses: actions/setup-python@v3
with:
python-version: '3.10'
- name: Install dependencies
run: |
python -m pip install -e .[dev] --no-cache-dir
- name: Get Python version and Update README.md
run: |
python_version=$(grep "requires-python" pyproject.toml | grep -o ">=[^\"]*")
python_badge=$(grep -o 'python-[^)]*' README.md)
new_python_badge="python-$python_version-blue?logo=python"
sed -i "s/$python_badge/$new_python_badge/g" README.md
- name: Get interrogate values and Update README.md
run: |
interrogate_val=$(interrogate . | grep -o 'actual: [0-9]*\.[0-9]*' | awk '{print $2}')
interrogate_badge=$(grep -o 'interrogate-[^)]*' README.md)
if (( $(echo "$interrogate_val >= 90.00" | bc -l) )); then
new_interrogate_badge="interrogate-$interrogate_val%25-brightgreen"
elif (( $(echo "$interrogate_val < 80.00" | bc -l) )); then
new_interrogate_badge="interrogate-$interrogate_val%25-red"
else
new_interrogate_badge="interrogate-$interrogate_val%25-yellow"
fi
sed -i "s/$interrogate_badge/$new_interrogate_badge/g" README.md
- name: Get Coverage values and Update README.md
run: |
coverage run -m unittest discover
coverage_val=$(coverage report | grep "^TOTAL" | grep -o '[0-9]\+%' | grep -o '[0-9]\+')
coverage_badge=$(grep -o "coverage-[^?]*" README.md)
if (( $(echo "$coverage_val >= 90.00" | bc -l) )); then
new_coverage_badge="coverage-$coverage_val%25-brightgreen"
elif (( $(echo "$coverage_val < 80.00" | bc -l) )); then
new_coverage_badge="coverage-$coverage_val%25-red"
else
new_coverage_badge="coverage-$coverage_val%25-yellow"
fi
sed -i "s/$coverage_badge/$new_coverage_badge/g" README.md
- name: Commit changes
uses: EndBug/add-and-commit@v9
with:
default_author: github_actions
message: "ci: update badges [skip actions]"
add: '["README.md"]'
tag:
needs: update_badges
uses: AllenNeuralDynamics/aind-github-actions/.github/workflows/tag.yml@main
secrets:
SERVICE_TOKEN: ${{ secrets.SERVICE_TOKEN }}
publish:
runs-on: ubuntu-latest
env:
GO_VERSION: '1.14.12'
GO_OS: 'linux'
GO_ARCH: 'amd64'
SINGULARITY_VERSION: '3.7.0'
needs: tag
steps:
- uses: actions/checkout@v3
- name: Pull latest changes
run: git pull origin main
- name: Install dependencies
run: |
sudo apt-get update && sudo apt-get install -y \
build-essential \
libssl-dev \
uuid-dev \
libgpgme11-dev \
squashfs-tools \
libseccomp-dev \
wget \
pkg-config \
procps
- name: Install GO
run: |
wget https://dl.google.com/go/go$GO_VERSION.$GO_OS-$GO_ARCH.tar.gz
sudo tar -C /usr/local -xzvf go$GO_VERSION.$GO_OS-$GO_ARCH.tar.gz
sudo rm go$GO_VERSION.$GO_OS-$GO_ARCH.tar.gz
echo 'export PATH=$PATH:/usr/local/go/bin' | sudo tee -a /etc/profile
- name: Install Singularity
run: |
cd ..
wget https://github.com/hpcng/singularity/releases/download/v${SINGULARITY_VERSION}/singularity-${SINGULARITY_VERSION}.tar.gz
sudo tar -xzf singularity-${SINGULARITY_VERSION}.tar.gz
sudo rm singularity-${SINGULARITY_VERSION}.tar.gz
echo "Finished installing binaries"
export PATH=$PATH:/usr/local/go/bin
cd singularity
sudo ./mconfig --without-suid
sudo make -C ./builddir
sudo make -C ./builddir install
- name: Build sif container
run: |
ls /
ls
mkdir build
sudo singularity build build/container.sif scripts/singularity_build.def
- name: Login and Deploy Container
run: |
echo ${{ secrets.GITHUB_TOKEN }} | singularity remote login -u ${{ github.actor }} --password-stdin oras://ghcr.io
singularity push build/container.sif oras://ghcr.io/${GITHUB_REPOSITORY}:${{ needs.tag.outputs.new_version }}
singularity push build/container.sif oras://ghcr.io/${GITHUB_REPOSITORY}:latest