Allen Institute for Neural Dynamics
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aind-data-schema
aind-data-schema PublicA library that defines AIND data schema and validates JSON.
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aind-ephys-spikesort-kilosort25-full
aind-ephys-spikesort-kilosort25-full PublicCodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.
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aind-ephys-pipeline
aind-ephys-pipeline PublicCode Ocean pipeline for processing extracellula electrophysiology data
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segmentation-skeleton-metrics
segmentation-skeleton-metrics PublicA Python package for evaluating a predicted segmentation of neural arbors by using skeleton-based metrics. This tool detects topological mistakes (i.e. splits and merges) in a predicted segmentatio…
Python 5
Repositories
- aind-exaspim-soma-detection Public
AllenNeuralDynamics/aind-exaspim-soma-detection’s past year of commit activity - metadata-chatbot Public
LLM (Anthropic Claude) based chatbot that can query, ingest and summarize metadata in a conversational form
AllenNeuralDynamics/metadata-chatbot’s past year of commit activity - aind-ophys-motion-correction Public
AllenNeuralDynamics/aind-ophys-motion-correction’s past year of commit activity - aind-ophys-dff Public
AllenNeuralDynamics/aind-ophys-dff’s past year of commit activity - aind-ophys-extraction-suite2p Public
Combines cellpose and suite2p to extract sources, i.e. ROIs and their traces.
AllenNeuralDynamics/aind-ophys-extraction-suite2p’s past year of commit activity