Repositories list

• aind-exaspim-soma-detection

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Nov 28, 2024Nov 28, 2024

• aind-behavior-video-transformation

  Public
  Library to manage compression and transformation of behavior videos

  Python

  •

  MIT License

  •0•0•2•0•Updated Nov 28, 2024Nov 28, 2024

• foraging-behavior-browser

  Public
  Foraging behavior browser (streamlit)

  Python

  •

  MIT License

  •2•2•14•0•Updated Nov 28, 2024Nov 28, 2024

• aind-foraging-behavior-bonsai-trigger-pipeline

  Public
  Python

  •

  MIT License

  •0•1•1•0•Updated Nov 28, 2024Nov 28, 2024

• aind-dynamic-foraging-data-utils

  Public
  Tools for the analysis of behavior and neural data from the dynamic foraging task

  Python

  •

  MIT License

  •0•2•22•0•Updated Nov 27, 2024Nov 27, 2024

• aind-metadata-entry-js

  Public
  Metadata entry using javascript

  aind-core-servicesaind-deploy-services

  JavaScript

  •

  MIT License

  •2•1•8•0•Updated Nov 27, 2024Nov 27, 2024

• aind-multiplane-ophys-pipeline-without-splitting

  Public
  Nextflow

  •

  MIT License

  •0•0•0•0•Updated Nov 27, 2024Nov 27, 2024

• metadata-chatbot

  Public
  LLM (Anthropic Claude) based chatbot that can query, ingest and summarize metadata in a conversational form

  Python

  •

  MIT License

  •0•1•0•0•Updated Nov 27, 2024Nov 27, 2024

• aind-ophys-motion-correction

  Public
  Python

  •

  MIT License

  •0•1•10•1•Updated Nov 27, 2024Nov 27, 2024

• aind-metadata-service

  Public
  Service to retrieve Labtracks/Sharepoint info using a REST API

  aind-core-servicesaind-deploy-services

  Python

  •

  MIT License

  •1•3•21•1•Updated Nov 27, 2024Nov 27, 2024

• aind-ophys-oasis-event-detection

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Nov 27, 2024Nov 27, 2024

• aind-ophys-dff

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Nov 27, 2024Nov 27, 2024

• aind-ophys-extraction-suite2p

  Public
  Combines cellpose and suite2p to extract sources, i.e. ROIs and their traces.

  Python

  •

  MIT License

  •0•0•2•0•Updated Nov 27, 2024Nov 27, 2024

• aind-ophys-decrosstalk-roi-images

  Public
  Python

  •

  MIT License

  •0•0•10•0•Updated Nov 27, 2024Nov 27, 2024

• aind-multiplane-ophys-pipeline

  Public
  Nextflow

  •

  MIT License

  •0•0•1•0•Updated Nov 27, 2024Nov 27, 2024

• dynamic-foraging-task

  Public
  Bonsai/Harp workflow for Dynamic Foraging with Python GUI for visualization and control

  Python

  •

  MIT License

  •4•5•124•5•Updated Nov 27, 2024Nov 27, 2024

• aind-units-nwb

  Public
  Code Ocean capsule to export ephys units data to NWB

  Python

  •

  MIT License

  •0•0•2•0•Updated Nov 27, 2024Nov 27, 2024

• aind-ecephys-nwb

  Public
  Code Ocean capsule to create an NWB file for Neuropixels data

  Python

  •

  MIT License

  •0•0•0•0•Updated Nov 27, 2024Nov 27, 2024

• aind-subject-nwb

  Public
  Python

  •

  MIT License

  •0•0•1•0•Updated Nov 27, 2024Nov 27, 2024

• aind-ccf-registration

  Public
  Python

  •

  MIT License

  •4•3•6•0•Updated Nov 27, 2024Nov 27, 2024

• FIP_DAQ_Control

  Public
  C++

  •

  MIT License

  •0•0•0•0•Updated Nov 27, 2024Nov 27, 2024

• aind-spurious-correlation

  Public
  statistical tools to mitigate spurious correlations

  Python

  •

  MIT License

  •0•0•1•0•Updated Nov 27, 2024Nov 27, 2024

• aind-data-schema-models

  Public
  Data models used in aind-data-schema

  Python

  •

  MIT License

  •2•0•7•2•Updated Nov 27, 2024Nov 27, 2024

• voxel

  Public
  General purpose microscope control repository

  Python

  •

  MIT License

  •3•4•13•1•Updated Nov 27, 2024Nov 27, 2024

• aind-qc-portal

  Public
  Quality control portal

  Python

  •

  MIT License

  •0•0•8•0•Updated Nov 26, 2024Nov 26, 2024

• aind-data-schema

  Public
  A library that defines AIND data schema and validates JSON.

  aind-core-services

  Python

  •

  MIT License

  •17•23•36•6•Updated Nov 26, 2024Nov 26, 2024

• aind_pose_tracking_pipeline_dispatcher

  Public
  Dockerfile

  •

  MIT License

  •0•0•0•0•Updated Nov 26, 2024Nov 26, 2024

• aind-data-upload-utils

  Public
  Library of utility methods to facilitate file uploads, such as partitioning directories.

  Python

  •

  MIT License

  •0•0•2•0•Updated Nov 26, 2024Nov 26, 2024

• exaspim-control

  Public
  Python

  •

  MIT License

  •0•1•3•0•Updated Nov 26, 2024Nov 26, 2024

• aind-ephys-job-dispatch

  Public
  Capsule to dispatch ephys jobs in CO pipeline

  Python

  •

  MIT License

  •0•0•0•0•Updated Nov 26, 2024Nov 26, 2024