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Issues: SWC-Advanced-Microscopy/StitchIt

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71 Open 102 Closed
71 Open 102 Closed
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Issues list

Why are we using imread instead of fread as done in MaSIV? high priority minor
#213 opened Dec 9, 2024 by raacampbell
syncAndCrunch on single machine systems should be able to autofind the acquisition folder high priority
#212 opened Sep 20, 2024 by raacampbell
stitchAllChannels fails on NIN acq PC bug high priority
#211 opened Sep 20, 2024 by raacampbell
1
syncAndCrunch on finished folder gives a cryptic error message
#210 opened Jan 12, 2024 by raacampbell
Add check for corrupt raw data files high priority
#208 opened Nov 17, 2023 by raacampbell
Use minimum of average template as its offset
#207 opened Jun 29, 2023 by raacampbell
@raacampbell
5
SyncAndCrunch fails to start if current folder is the microscope raw data folder bug
#206 opened Jan 18, 2023 by mkrumin
2
samplesplitter should list % decrease in data size minor
#205 opened Dec 1, 2022 by raacampbell
syncadncrunch logic at the end of the acquisition on slow connection
#204 opened Nov 25, 2022 by mkrumin
1
syncAndCrunch fails to generate preview (slow connection?)
#203 opened Nov 25, 2022 by mkrumin
3
some syncAndCrunch samples are not completing as normal
#202 opened Nov 22, 2022 by raacampbell
1
The wildcard used to stop existing instances of a syncAndCrunch acq can halt similarly named ones bug minor
#201 opened Nov 3, 2022 by raacampbell
syncAndCrunch messes up recipe files with acq resume as it does not delete those that were copied first to root dir
#199 opened Oct 5, 2022 by raacampbell
Only offsetDimest works
#198 opened Mar 31, 2022 by raacampbell
Does split illumination honour the new dominant tiling direction of BakingTray?
#195 opened Nov 30, 2021 by raacampbell
stitched images have bottom and left edges cropped peeksection is ok bug high priority
#192 opened Jun 23, 2021 by raacampbell
1
Downsampled stacks: fix black tiles? question
#190 opened Apr 22, 2021 by raacampbell
Stitching errors (such as tile rows not being laid down) should be logged somwhere high priority
#188 opened Mar 6, 2021 by raacampbell
Ensure we write stitched images which have file names that include the sample ID high priority
#187 opened Feb 4, 2021 by raacampbell
The empty tile threshold is wrong bug high priority
#181 opened Dec 10, 2020 by raacampbell
1
downsampleAllChannels seems to use a lot of RAM unconfirmed
#176 opened Sep 24, 2020 by raacampbell
1
Total sections left wrong with preview bug minor
#174 opened Jul 16, 2020 by raacampbell
1
tileIndex file still being written by section preview duplicate minor
#173 opened Jul 16, 2020 by raacampbell
2
What is the StitchIt_Log.txt file in the root of the analysis machine RAID array?
#172 opened Jul 15, 2020 by raacampbell
1
remove TissueCyte class Low priority Major
#162 opened Mar 6, 2020 by raacampbell
3
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