did more cleanup of build files

did more dependency cleanup

finished cleaning up the source dependencies

went through all the jar dependencies

atlas/build.gradle.kts

@@ -14,37 +14,20 @@ ihmc {
 }
 
 mainDependencies {
-   api("org.ddogleg:ddogleg:0.18")
    api("org.apache.xmlgraphics:batik-dom:1.14")
-   api("org.apache.ant:ant:1.9.0")
-   api("com.martiansoftware:jsap:2.1")
-   api("org.boofcv:boofcv-calibration:0.36")
-   api("org.boofcv:boofcv-swing:0.36")
-   api("com.github.wendykierp:JTransforms:3.1")
 
-   api("us.ihmc:euclid-frame-shape:0.21.0")
-   api("us.ihmc:ihmc-javafx-toolkit:17-0.22.9")
-   api("us.ihmc:ihmc-humanoid-behaviors:source")
    api("us.ihmc:ihmc-avatar-interfaces-visualizers:source")
    api("us.ihmc:robotiq-hand-drivers:source")
    api("us.ihmc:ihmc-model-file-loader:source")
-   api("us.ihmc:ihmc-robot-data-visualizer:source")
    api("us.ihmc:ihmc-manipulation-planning:source")
    api("us.ihmc:ihmc-parameter-tuner:source")
    api("us.ihmc:ihmc-footstep-planning-visualizers:source")
    api("us.ihmc:ihmc-high-level-behaviors:source")
 }
 
 testDependencies {
-   api("com.thoughtworks.xstream:xstream:1.4.19")
-
-   api("us.ihmc:ihmc-commons-testing:0.32.0")
-   api("us.ihmc:ihmc-robotics-toolkit-test:source")
-   api("us.ihmc:ihmc-common-walking-control-modules-test:source")
    api("us.ihmc:ihmc-avatar-interfaces-test:source")
-   api("us.ihmc:ihmc-humanoid-robotics-test:source")
    api("us.ihmc:ihmc-sensor-processing-test:source")
    api("us.ihmc:ihmc-simulation-toolkit-test:source")
-   api("us.ihmc:simulation-construction-set-tools-test:source")
    api("us.ihmc:ihmc-messager-test:0.2.0")
 }

example-simulations/build.gradle.kts

@@ -13,12 +13,10 @@ ihmc {
 }
 
 mainDependencies {
-   api("us.ihmc:ihmc-model-file-loader:source")
    api("us.ihmc:ihmc-quadruped-robotics:source")
 }
 
 testDependencies {
-   api("us.ihmc:ihmc-commons-testing:0.32.0")
    api("us.ihmc:ihmc-robotics-toolkit-test:source")
    api("us.ihmc:ihmc-quadruped-robotics-test:source")
    api("us.ihmc:ihmc-quadruped-planning-test:source")

ihmc-avatar-interfaces/build.gradle.kts

@@ -16,43 +16,16 @@ ihmc {
 mainDependencies {
    api("com.martiansoftware:jsap:2.1")
    api("org.apache.poi:poi:3.15") // I/O library for xls files.
-   api("org.ejml:ejml-core:0.39")
-   api("org.ejml:ejml-ddense:0.39")
-   api("org.boofcv:boofcv-geo:0.36")
-   api("org.jfree:jfreechart:1.0.19")
-   api("com.github.quickhull3d:quickhull3d:1.0.0")
-   api("com.github.wendykierp:JTransforms:3.1")
-   api("org.reflections:reflections:0.9.10")
    api("com.hierynomus:sshj:0.32.0")
 
-   api("us.ihmc:euclid:0.21.0")
-   api("us.ihmc:euclid-geometry:0.21.0")
    api("us.ihmc:mecano-graphviz:17-0.18.1")
-   api("us.ihmc:robot-environment-awareness:source")
-   api("us.ihmc:robot-environment-awareness-visualizers:source")
-   api("us.ihmc:ihmc-ros-tools:source")
-   api("us.ihmc:ihmc-common-walking-control-modules:source")
-   api("us.ihmc:ihmc-model-file-loader:source")
-   api("us.ihmc:ihmc-sensor-processing:source")
-   api("us.ihmc:ihmc-communication:source")
+   api("us.ihmc:scs2-bullet-simulation:17-0.26.0")
+
    api("us.ihmc:ihmc-humanoid-behaviors:source")
-   api("us.ihmc:ihmc-humanoid-robotics:source")
-   api("us.ihmc:ihmc-perception:source")
-   api("us.ihmc:ihmc-whole-body-controller:source")
-   api("us.ihmc:ihmc-state-estimation:source")
-   api("us.ihmc:ihmc-java-toolkit:source")
-   api("us.ihmc:ihmc-robotics-toolkit:source")
-   api("us.ihmc:ihmc-robot-models:source")
-   api("us.ihmc:ihmc-graphics-javafx:source")
    api("us.ihmc:ihmc-graphics-jmonkeyengine:source")
    api("us.ihmc:ihmc-simulation-toolkit:source")
    api("us.ihmc:ihmc-robot-data-visualizer:source")
-   api("us.ihmc:ihmc-footstep-planning:source")
-   api("us.ihmc:simulation-construction-set-tools:source")
-   api("us.ihmc:scs2-definition:17-0.26.0")
-   api("us.ihmc:scs2-bullet-simulation:17-0.26.0")
-   api("us.ihmc:scs2-session-visualizer-jfx:17-0.26.0")
-   api("us.ihmc:scs2-simulation-construction-set:17-0.26.0")
+   api("us.ihmc:robot-environment-awareness-visualizers:source")
 }
 
 testDependencies {
@@ -68,7 +41,6 @@ testDependencies {
 visualizersDependencies {
    api(ihmc.sourceSetProject("main"))
 
-   api("us.ihmc:ihmc-javafx-toolkit:17-0.22.9")
    api("us.ihmc:robot-environment-awareness-application:source")
    api("us.ihmc:ihmc-path-planning-visualizers:source")
    api("us.ihmc:ihmc-footstep-planning-visualizers:source")

ihmc-common-walking-control-modules/build.gradle.kts

@@ -14,31 +14,14 @@ ihmc {
 }
 
 mainDependencies {
-   api("gov.nist.math:jama:1.0.3")
-   api("com.google.guava:guava:18.0")
-   api("org.ejml:ejml-ddense:0.39")
-   api("org.ejml:ejml-core:0.39")
-   api("net.sf.trove4j:trove4j:3.0.3")
-
-   api("us.ihmc:ihmc-realtime:1.6.0")
-   api("us.ihmc:ihmc-native-library-loader:2.0.3")
-   api("us.ihmc:euclid:0.21.0")
-   api("us.ihmc:euclid-geometry:0.21.0")
-   api("us.ihmc:ihmc-robot-models:source")
-   api("us.ihmc:ihmc-sensor-processing:source")
    api("us.ihmc:ihmc-trajectory-optimization:source")
-   api("us.ihmc:ihmc-communication:source")
    api("us.ihmc:ihmc-convex-optimization:0.17.19")
-   api("us.ihmc:ihmc-robotics-toolkit:source")
-   api("us.ihmc:ihmc-java-toolkit:source")
-//   api("us.ihmc:ihmc-footstep-planning:source")
    api("us.ihmc:ihmc-humanoid-robotics:source")
    api("us.ihmc:ihmc-parameter-estimation:source")
 }
 
 testDependencies {
    api(ihmc.sourceSetProject("visualizers"))
-   api("us.ihmc:ihmc-commons-testing:0.32.0")
    api("us.ihmc:simulation-construction-set-tools-test:source")
    api("us.ihmc:ihmc-robotics-toolkit-test:source")
    api("us.ihmc:ihmc-robotics-toolkit-test:source")

ihmc-footstep-planning/build.gradle.kts

@@ -14,35 +14,22 @@ ihmc {
 }
 
 mainDependencies {
-   api("us.ihmc:ihmc-convex-optimization:0.17.19")
-   api("us.ihmc:ihmc-path-planning:source")
    api("us.ihmc:ihmc-perception:source")
    api("us.ihmc:ihmc-common-walking-control-modules:source")
    api("us.ihmc:ihmc-path-planning-data-sets:source")
-   api("us.ihmc:ihmc-pub-sub-serializers-extra:0.19.1")
 }
 
 testDependencies {
    api(ihmc.sourceSetProject("visualizers"))
 
-   api("us.ihmc:ihmc-path-planning-data-sets:source")
-   api("us.ihmc:ihmc-robotics-toolkit:source")
    api("us.ihmc:ihmc-path-planning-test:source")
    api("us.ihmc:simulation-construction-set-tools-test:source")
 }
 
 visualizersDependencies {
    api(ihmc.sourceSetProject("main"))
 
-   api("us.ihmc:ihmc-messager-javafx:0.2.0")
-   api("us.ihmc:ihmc-javafx-toolkit:17-0.22.9")
-   api("us.ihmc:robot-environment-awareness-application:source")
-   api("us.ihmc:ihmc-communication:source")
    api("us.ihmc:ihmc-path-planning-visualizers:source")
-   api("us.ihmc:ihmc-robot-models:source")
-   api("us.ihmc:ihmc-graphics-javafx:source")
-   api("us.ihmc:ihmc-graphics-jmonkeyengine:source")
-   api("us.ihmc:ihmc-whole-body-controller:source")
    api("us.ihmc:ihmc-common-walking-control-modules-test:source")
 
 }

ihmc-graphics/build.gradle.kts

@@ -14,7 +14,6 @@ ihmc {
 
 mainDependencies {
    api("us.ihmc:ihmc-sensor-processing:source")
-   api("us.ihmc:ihmc-graphics-description:0.25.1")
 }
 
 testDependencies {

ihmc-high-level-behaviors/build.gradle.kts

@@ -23,12 +23,6 @@ mainDependencies {
 }
 
 missionControlDependencies {
-   api("us.ihmc:ihmc-commons:0.32.0")
-   api("us.ihmc:log-tools:0.6.3")
-   api("us.ihmc:ihmc-ros2-library:0.24.2")
-   api("us.ihmc:ihmc-java-toolkit:source")
-   api("us.ihmc:ihmc-robotics-toolkit:source")
-   api("us.ihmc:ihmc-interfaces:source")
    api("us.ihmc:ihmc-communication:source")
 }
 
@@ -37,9 +31,6 @@ libgdxDependencies {
    api(ihmc.sourceSetProject("mission-control"))
    api("org.abego.treelayout:org.abego.treelayout.core:1.0.3")
    api("us.ihmc:ihmc-graphics-libgdx:source")
-   api("us.ihmc:ihmc-graphics-libgdx:source")
-   api("us.ihmc:scs2-definition:17-0.26.0")
-   api("us.ihmc:mecano-graphviz:17-0.18.1")
    api("com.badlogicgames.gdx-controllers:gdx-controllers-core:2.2.3")
    api("com.badlogicgames.gdx-controllers:gdx-controllers-desktop:2.2.3")
    api("commons-io:commons-io:2.11.0") // IOUtils method was old version without this
@@ -53,12 +44,6 @@ testDependencies {
    api("us.ihmc:scs2-examples:17-0.26.0")
    api("us.ihmc:scs2-bullet-simulation-test:17-0.26.0")
    api("us.ihmc:example-simulations:source")
-
-   api("us.ihmc:ihmc-avatar-interfaces:source") {
-      exclude(group = "org.openjfx")
-      exclude(group = "org.jmonkeyengine")
-      exclude(group = "org.lwjgl.lwjgl") // exclude lwjgl 2
-   }
 }
 
 app.entrypoint(ihmc.sourceSetProject("mission-control"),
@@ -86,7 +71,7 @@ tasks.create("deploy") {
          // Delete mission-control-2 if it's still around
          exec("sudo systemctl stop mission-control-2")
          exec("sudo systemctl disable mission-control-2")
-         exec("sudo rm -rf /etc/systemd/system/mission-control-2.service");
+         exec("sudo rm -rf /etc/systemd/system/mission-control-2.service")
 
          exec("sudo systemctl stop mission-control-3")
 

ihmc-humanoid-behaviors/build.gradle.kts

@@ -13,21 +13,9 @@ ihmc {
 }
 
 mainDependencies {
-   api("com.thoughtworks.xstream:xstream:1.4.19")
-   api("org.georegression:georegression:0.22")
-   api("org.boofcv:boofcv-geo:0.36")
-   api("org.boofcv:boofcv-ip:0.36")
-   api("org.boofcv:boofcv-io:0.36")
-   api("org.boofcv:boofcv-recognition:0.36")
    api("org.postgresql:postgresql:42.2.5")
 
-   api("us.ihmc:simulation-construction-set:0.25.1")
    api("us.ihmc:ihmc-manipulation-planning:source")
-   api("us.ihmc:ihmc-communication:source")
-   api("us.ihmc:ihmc-humanoid-robotics:source")
-   api("us.ihmc:ihmc-robot-data-logger:0.29.1")
-   api("us.ihmc:ihmc-whole-body-controller:source")
-   api("us.ihmc:ihmc-perception:source")
    api("us.ihmc:ihmc-footstep-planning:source")
 }
 

ihmc-interfaces/build.gradle.kts

@@ -29,7 +29,6 @@ ihmc {
 }
 
 mainDependencies {
-   api("us.ihmc:euclid:0.21.0")
    api("us.ihmc:euclid-geometry:0.21.0")
    api("us.ihmc:ihmc-pub-sub:0.19.1")
    api("us.ihmc:ros2-common-interfaces:0.24.2") {

ihmc-java-toolkit/build.gradle.kts

@@ -25,8 +25,6 @@ mainDependencies {
 
    api("us.ihmc:ihmc-commons:0.32.0")
    api("us.ihmc:log-tools:0.6.3")
-   api("us.ihmc:euclid:0.21.0")
-   api("us.ihmc:euclid-frame:0.21.0")
    api("us.ihmc:euclid-shape:0.21.0")
    api("us.ihmc:euclid-geometry:0.21.0")
    api("us.ihmc:ihmc-graphics-description:0.25.1")

ihmc-manipulation-planning/build.gradle.kts

@@ -13,14 +13,8 @@ ihmc {
 }
 
 mainDependencies {
-   api("javax.vecmath:vecmath:1.5.2")
-   api("org.georegression:georegression:0.22")
-
    api("us.ihmc:simulation-construction-set:0.25.1")
-   api("us.ihmc:ihmc-communication:source")
-   api("us.ihmc:ihmc-sensor-processing:source")
    api("us.ihmc:ihmc-whole-body-controller:source")
-   api("us.ihmc:ihmc-humanoid-robotics:source")
 }
 
 testDependencies {

ihmc-parameter-estimation/build.gradle.kts

@@ -13,9 +13,6 @@ ihmc {
 }
 
 mainDependencies {
-   api("us.ihmc:mecano:17-0.18.1")
-   api("us.ihmc:log-tools:0.6.3")
-   api("us.ihmc:ihmc-robotics-toolkit:source")
    api("us.ihmc:ihmc-robot-models:source")
 }
 

ihmc-parameter-tuner/build.gradle.kts

@@ -18,10 +18,8 @@ mainDependencies {
    api("jakarta.xml.bind:jakarta.xml.bind-api:2.3.2")
    api("org.glassfish.jaxb:jaxb-runtime:2.3.2")
 
-   api("us.ihmc:ihmc-javafx-toolkit:17-0.22.9")
    api("us.ihmc:ihmc-robot-data-logger:0.29.1")
    api("us.ihmc:ihmc-graphics-javafx:source")
-   api("us.ihmc:ihmc-robotics-toolkit:source")
 
    var javaFXVersion = "17.0.9"
    api(ihmc.javaFXModule("base", javaFXVersion))