Merge pull request #62 from neuromatch/release-v0.2.0

Release v0.2.0

.github/actions/check-notebooks/action.yaml

@@ -14,6 +14,12 @@ inputs:
     required: false
     default: false
     type: string
+  cdsapi_uid:
+    description: 'CDSAPI UID'
+    required: true
+  cdsapi_key:
+    description: 'CDSAPI Key'
+    required: true
 
 runs:
   using: composite
@@ -47,6 +53,8 @@ runs:
       if: "!contains(env.COMMIT_MESSAGE, 'skip ci')"
       id: changed-files
       uses: tj-actions/changed-files@v35
+      with:
+        files_ignore: projects/archive/*
 
     - name: List all changed files
       run: |
@@ -79,6 +87,10 @@ runs:
       id: process_notebooks
       if: ${{ env.NBS != '' }}
       run: |
+        # process notebooks
+        # add cdsapi credentials for projects
+        echo "url: https://cds.climate.copernicus.eu/api/v2" >> /home/runner/.cdsapirc
+        echo "key: ${{ inputs.cdsapi_uid }}:${{ inputs.cdsapi_key }}" >> /home/runner/.cdsapirc
         python ci/process_notebooks.py ${{ env.NBS }} ${{ inputs.exec_flag}}
       shell: bash -l {0}
 

.github/actions/setup/action.yaml

@@ -133,12 +133,16 @@ runs:
     - name: Update environment
       if: ${{steps.cache-python.outputs.cache-hit != 'true' || inputs.force_env_update == 'true'}}
       run: |
+        # Install python dependencies
         # mamba env update -n climatematch -f environment.yml
         pip install -r ci/requirements.txt
         pip install -r requirements.txt
+        pip install ecmwflibs
+        pip install eccodes==1.3.1
+        pip install cfgrib
+        python -m cfgrib selfcheck
         pip install requests aiohttp
         pip install jupyter-book==0.14.0 ghp-import cftime pyleoclim importlib-metadata==4.13.0
-        # pip install climlab==0.8.2
       shell: bash -l {0}
 
     - name: Build climlab from source

.github/workflows/notebook-pr.yaml

@@ -59,6 +59,8 @@ jobs:
           # exec_flag: '--check-only'
           exec_flag: '--execute'
           # exercise-continue-on-error: true
+          cdsapi_uid: ${{ secrets.CDSAPI_UID }}
+          cdsapi_key: ${{ secrets.CDSAPI_KEY }}
 
       # - name: Add PR comment
       #   if: ${{ env.NBS != '' }}

.gitignore

@@ -1,4 +1,6 @@
 book/_build/
+*.grib
+*.idx
 *.nc
 *.csv
 .ipynb_checkpoints/

projects/project-notebooks/Regional_precipitation_variability.ipynb → projects/archive/Regional_precipitation_variability.ipynb

@@ -1,6 +1,6 @@
 {
  "cells": [
- {
+  {
    "cell_type": "markdown",
    "metadata": {
     "execution": {}
@@ -554,7 +554,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.10.11"
+   "version": "3.9.16"
   }
  },
  "nbformat": 4,

projects/keynote.ipynb

@@ -3,7 +3,9 @@
   {
    "cell_type": "markdown",
    "id": "347f0ae5",
-   "metadata": {},
+   "metadata": {
+    "execution": {}
+   },
    "source": [
     "[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/neuromatch/climate-course-content/blob/main/tutorials/W2D2_ProjectsDay/W2D2_Intro.ipynb) &nbsp; <a href=\"https://kaggle.com/kernels/welcome?src=https://raw.githubusercontent.com/neuromatch/climate-course-content/main/tutorials/W2D2_ProjectsDay/W2D2_Intro.ipynb\" target=\"_parent\"><img src=\"https://kaggle.com/static/images/open-in-kaggle.svg\" alt=\"Open in Kaggle\"/></a>"
    ]
@@ -35,9 +37,9 @@
     "execution": {}
    },
    "source": [
-    "Today marks the transition point from our study of the physical aspect of the climate system and climate change to the socio-economic effects of climate change as well as mitigation and adaptation strategies. You will start the day learning about individual and collective action.\n",
+    "Today marks the last day of an intense week, where we covered the study of the physical aspect of the climate system and climate change and its socio-economic effects as well as mitigation and adaptation strategies. You will start the day learning about individual and collective action.\n",
     "\n",
-    "What is it that we can expect from climate change in the future? How do do energy and food systems specifically contribute to climate change and what can we do to minimize this contribution? In his lecture, Dr Paul Behrens is talks about what choices we can make as individuals and as societies to improve the chances for a better future.\n",
+    "What is it that we can expect from climate change in the future? How do energy and food systems specifically contribute to climate change and what can we do to minimize this contribution? In his lecture, Dr. Paul Behrens talks about what choices we can make as individuals and as societies to improve the chances for a better future. \n",
     "You will then focus the rest of your day on advancing your research projects. There will be no tutorials."
    ]
   },
@@ -59,7 +61,22 @@
     "cellView": "form",
     "execution": {}
    },
-   "outputs": [],
+   "outputs": [
+    {
+     "data": {
+      "application/vnd.jupyter.widget-view+json": {
+       "model_id": "fc4d62174a794907b031880e6fb2795c",
+       "version_major": 2,
+       "version_minor": 0
+      },
+      "text/plain": [
+       "Tab(children=(Output(), Output()), selected_index=0, titles=('Youtube', 'Bilibili'))"
+      ]
+     },
+     "metadata": {},
+     "output_type": "display_data"
+    }
+   ],
    "source": [
     "# @markdown\n",
     "\n",
@@ -127,38 +144,52 @@
     "cellView": "form",
     "execution": {}
    },
-   "outputs": [],
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "If you want to download the slides: https://osf.io/download/3tc2h/\n"
+     ]
+    },
+    {
+     "data": {
+      "text/html": [
+       "\n",
+       "        <iframe\n",
+       "            width=\"854\"\n",
+       "            height=\"480\"\n",
+       "            src=\"https://mfr.ca-1.osf.io/render?url=https://osf.io/3tc2h/?direct%26mode=render%26action=download%26mode=render\"\n",
+       "            frameborder=\"0\"\n",
+       "            allowfullscreen\n",
+       "            \n",
+       "        ></iframe>\n",
+       "        "
+      ],
+      "text/plain": [
+       "<IPython.lib.display.IFrame at 0x7f5df4e47520>"
+      ]
+     },
+     "execution_count": 2,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
    "source": [
-    "# @markdown\n",
-    "from ipywidgets import widgets\n",
+    "# @title Slides\n",
+    "# @markdown These are the slides for the videos in all tutorials today\n",
     "from IPython.display import IFrame\n",
-    "\n",
     "link_id = \"3tc2h\"\n",
-    "\n",
-    "download_link = f\"https://osf.io/download/{link_id}/\"\n",
-    "render_link = f\"https://mfr.ca-1.osf.io/render?url=https://osf.io/{link_id}/?direct%26mode=render%26action=download%26mode=render\"\n",
-    "# @markdown\n",
-    "out = widgets.Output()\n",
-    "with out:\n",
-    "    print(f\"If you want to download the slides: {download_link}\")\n",
-    "    display(IFrame(src=f\"{render_link}\", width=730, height=410))\n",
-    "display(out)"
+    "print(f\"If you want to download the slides: https://osf.io/download/{link_id}/\")\n",
+    "IFrame(src=f\"https://mfr.ca-1.osf.io/render?url=https://osf.io/{link_id}/?direct%26mode=render%26action=download%26mode=render\", width=854, height=480)"
    ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "id": "9f88fae3",
-   "metadata": {},
-   "outputs": [],
-   "source": []
   }
  ],
  "metadata": {
   "colab": {
    "collapsed_sections": [],
    "include_colab_link": true,
-   "name": "W2D1_Intro",
+   "name": "keynote",
    "toc_visible": true
   },
   "kernel": {
@@ -181,7 +212,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.10.8"
+   "version": "3.9.19"
   }
  },
  "nbformat": 4,