bf regex filterNcGenes

vertesy · Jun 20, 2024 · 349a066 · 349a066
1 parent 578a9bd
commit 349a066
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Showing 2 changed files with 10 additions and 3 deletions.
diff --git a/R/Seurat.Utils.R b/R/Seurat.Utils.R
@@ -1005,8 +1005,9 @@ calc.q99.Expression.and.set.all.genes <- function(
 #' @export
 filterNcGenes <- function(genes, pattern_NC = c("^AC[0-9].+", "^AL[0-9].+", "^AP[0-9].+",
                                                 "^AF[0-9].+", "^Z[0-9]+.+",
-                                                "^LINC0.+", "^C[1-9]orf.+", "^MIR[1-9].+",
-                                                ".+\\.AS[1-9]$", ".+\\.DT[1-9]$"),
+                                                "^LINC0.+", "^C[1-9]+orf.+", "^MIR[1-9].+",
+                                                ".+\\.AS[1-9]*$", ".+\\-AS[1-9]*$",
+                                                ".+\\.DT[1-9]*$", ".+\\-DT[1-9]*$"),
                           unique = TRUE, ...) {
 
   # Input assertions

diff --git a/man/qSeuViolin.Rd b/man/qSeuViolin.Rd