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19 Open 9 Closed
19 Open 9 Closed
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Issues list

update to swarm 2
#74 opened Feb 12, 2016 by colinbrislawn
1
Mothur app controller fails when temp directory has dash in filepath
#71 opened Aug 27, 2015 by kylebittinger
grep the burrito-fillings code base for /tmp and replace with tempfile.gettempdir()
#62 opened May 1, 2015 by gregcaporaso
improve uclust application controller error reporting
#56 opened Dec 17, 2014 by ebolyen
uclust.py should accept a temporary directory as an argument
#55 opened Dec 17, 2014 by ebolyen
2
usearch de novo (no chimera checking) gives incorrect results
#45 opened Oct 10, 2014 by ekopylova
add import of cogent aligner for access in QIIME
#36 opened Jul 12, 2014 by gregcaporaso
Change to the numpy doc standard for sortmerna + sumaclust api's
#34 opened Jun 26, 2014 by ekopylova
brokit.get_clusters_from_fasta_filepath failing to remove output files
#31 opened Jun 10, 2014 by charudatta-navare
1
Vienna package controller
#30 opened Jun 9, 2014 by squirrelo
update brokit license information to indicate that it's actually GPL
#27 opened May 14, 2014 by gregcaporaso
1
Allow for --usearch_local in usearch 6.1
#22 opened Apr 28, 2014 by audy
1
missing tmp dir in get_clusters_from_fasta_filepath function from uclust
#21 opened Apr 22, 2014 by josenavas
brokit-wrapped applications that are not currently installed in the QIIME VM
#20 opened Apr 21, 2014 by gregcaporaso
7
mothur.py app controller may not be completely tested
#5 opened Mar 14, 2014 by josenavas
rdp_classifier.py app controler may not include complete tests
#4 opened Mar 14, 2014 by josenavas
seqprep.py app controller does not have tests
#3 opened Mar 14, 2014 by josenavas
1
fastq_join.py app controller does not have tests
#2 opened Mar 14, 2014 by josenavas
2
Which application controllers do we want to maintain?
#1 opened Mar 14, 2014 by josenavas
9
ProTip! no:milestone will show everything without a milestone.